View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_18 (Length: 309)

Name: NF6378_low_18
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_18
NF6378_low_18
[»] chr3 (13 HSPs)
chr3 (19-309)||(27206491-27206782)
chr3 (47-309)||(31093655-31093922)
chr3 (96-309)||(13002909-13003122)
chr3 (54-222)||(16163241-16163414)
chr3 (96-309)||(31252464-31252677)
chr3 (61-193)||(27229267-27229404)
chr3 (117-215)||(25658664-25658762)
chr3 (117-215)||(25665069-25665167)
chr3 (117-215)||(25671474-25671572)
chr3 (117-215)||(25677879-25677977)
chr3 (117-215)||(25684555-25684653)
chr3 (251-309)||(27229151-27229209)
chr3 (242-303)||(16163160-16163221)
[»] scaffold0029 (2 HSPs)
scaffold0029 (120-215)||(18364-18459)
scaffold0029 (120-215)||(43376-43471)
[»] chr2 (2 HSPs)
chr2 (120-215)||(33120609-33120704)
chr2 (120-215)||(33130352-33130447)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 309
Target Start/End: Complemental strand, 27206782 - 27206491
Alignment:
Q  19 aagtaaaacctgcattattgatataaagttagtgcatgggaacaaataaatttgacaagaatagatgaatgtaaaccaggaaagaaaataattgctccac 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27206782 aagtaaaacctgcattattgatataaagttagtgcatggaaacaaataaatttgacaagaatagatcaatgtaaaccaggaaagaaaataattgctccac 27206683  T
Q  119 acaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtcttta 218  Q
    || |||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27206682 ac-ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggtgtttatgccttagtgtcttta 27206584  T
Q  219 tgga--nnnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatgtatcatagtcttctttcttctgact 309  Q
    ||||                 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27206583 tggattttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgact 27206491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 47 - 309
Target Start/End: Original strand, 31093655 - 31093922
Alignment:
Q  47 ttagtgcatgggaacaaataaatttgacaagaatagatgaatgtaaac----ca-ggaaagaaaataattgctccacacaccatattgttgtggtgcttg 141  Q
    ||||||||||||| ||||||||||||| ||| ||| || |||| ||||    || |||||||||||||| ||||||| ||||||||||||||||||||||    
T  31093655 ttagtgcatgggatcaaataaatttgataagtataaatcaatgaaaacttaacatggaaagaaaataatggctccacgcaccatattgttgtggtgcttg 31093754  T
Q  142 gtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtctttatggannnnnnnnnnnnnnnattg 241  Q
     |||||| ||||| |||| |||||| ||||||| |||||||||||||||||||| ||||| ||  ||| | ||| ||||||               |||     
T  31093755 atataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggtgtttctgttttattatctctatggatttttttagctgctcatta 31093854  T
Q  242 aagtattttatgaaagagttgtatgctatcaaacatccaaatgtatcatagtcttctttcttctgact 309  Q
    |||||||  ||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  31093855 aagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgact 31093922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 96 - 309
Target Start/End: Original strand, 13002909 - 13003122
Alignment:
Q  96 aggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgagg 195  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||| |||| |||||| | ||||| ||||||||||||||||||||    
T  13002909 aggaaagaaaataattgctccacacaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagg 13003008  T
Q  196 atgtttatgccttagtgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatgtatcatagtct 295  Q
     ||||| ||  ||| ||||| ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||  ||||||||||    
T  13003009 gtgtttctgttttattgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtct 13003108  T
Q  296 tctttcttctgact 309  Q
    ||||||||||||||    
T  13003109 tctttcttctgact 13003122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 16163414 - 16163241
Alignment:
Q  54 atgggaacaaataaatttgacaagaatagatgaatgtaaacc-----aggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaa 148  Q
    |||||| |||||||||||| |||||||| || |||||||||      |||||  ||||||||||||||||| ||||||||||||||||||||  ||||||    
T  16163414 atgggatcaaataaatttgtcaagaataaataaatgtaaacttaacaaggaagtaaaataattgctccacagaccatattgttgtggtgcttcatataaa 16163315  T
Q  149 tgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtctttatgga 222  Q
     ||||| |||| |||||  ||||||| |||| ||||||||||||||||||||| |||| || ||||| ||||||    
T  16163314 cgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttctgccgtaatgtctctatgga 16163241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 96 - 309
Target Start/End: Complemental strand, 31252677 - 31252464
Alignment:
Q  96 aggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgagg 195  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||| |||||| | ||| |||| |||||| | ||||| ||||||||||||||||||||    
T  31252677 aggaaagaaaataattgctccacacaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagg 31252578  T
Q  196 atgtttatgccttagtgtctttatggannnnnnnnnnnnnnnattgaagtattttatgaaagagttgtatgctatcaaacatccaaatgtatcatagtct 295  Q
     ||||| ||  ||| ||||| ||||||               ||| |||||||  |||| || |||||| ||||||||||||||||||  ||||||||||    
T  31252577 gtgtttctgttttattgtctctatggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtct 31252478  T
Q  296 tctttcttctgact 309  Q
    ||||||||||||||    
T  31252477 tctttcttctgact 31252464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 27229404 - 27229267
Alignment:
Q  61 caaataaatttgacaagaatagatgaatgtaaac-----caggaaagaaaataattgctccacacaccatattgttgtggtgcttggtataaatgtttga 155  Q
    ||||| |||||||||||||| ||| |||||||||      || ||||||||||||| |||| || | ||||||||||||||| ||| |||||| ||||||    
T  27229404 caaatgaatttgacaagaatcgattaatgtaaacttggaaagaaaagaaaataattactccgcatatcatattgttgtggtgattgatataaacgtttga 27229305  T
Q  156 catcattgtaaaagtcaaagtatactatcttagcttga 193  Q
    ||  ||||||   ||||||||||| |||| ||||||||    
T  27229304 caatattgtagtggtcaaagtatattatcctagcttga 27229267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 25658762 - 25658664
Alignment:
Q  117 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25658762 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25658664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 25665167 - 25665069
Alignment:
Q  117 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25665167 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25665069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 25671572 - 25671474
Alignment:
Q  117 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25671572 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25671474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 25677977 - 25677879
Alignment:
Q  117 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25677977 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25677879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 25684653 - 25684555
Alignment:
Q  117 acacaccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| ||||||| ||| |||||| |||||| ||  |||||  ||||||| |||| ||||||||||||||| | |||||| |||| |||||    
T  25684653 acacaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtct 25684555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 309
Target Start/End: Complemental strand, 27229209 - 27229151
Alignment:
Q  251 atgaaagagttgtatgctatcaaacatccaaatgtatcatagtcttctttcttctgact 309  Q
    ||||||| |||||| | ||||||||||||||||  |||||| |||||||||||||||||    
T  27229209 atgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgact 27229151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 16163221 - 16163160
Alignment:
Q  242 aagtattttatgaaagagttgtatgctatcaaacatccaaatgtatcatagtcttctttctt 303  Q
    |||||||  |||||||||||||| ||||| ||||||||||||  |||||| || ||||||||    
T  16163221 aagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttctt 16163160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 18364 - 18459
Alignment:
Q  120 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 18459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 43376 - 43471
Alignment:
Q  120 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| |||| ||| ||||||  |||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 43471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 33120609 - 33120704
Alignment:
Q  120 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33120704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 33130352 - 33130447
Alignment:
Q  120 caccatattgttgtggtgcttggtataaatgtttgacatcattgtaaaagtcaaagtatactatcttagcttgaggatgtttatgccttagtgtct 215  Q
    ||||||||||||| |||| ||| |||||| ||||| ||||||| ||  |||||||||||| ||||||| ||| ||| || || || ||||||||||    
T  33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtct 33130447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University