View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_2 (Length: 564)

Name: NF6378_low_2
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_2
NF6378_low_2
[»] chr4 (6 HSPs)
chr4 (10-546)||(36617265-36617801)
chr4 (10-514)||(18082912-18083416)
chr4 (102-404)||(36636767-36637069)
chr4 (77-135)||(55966820-55966878)
chr4 (277-357)||(15582174-15582254)
chr4 (351-404)||(36668679-36668732)
[»] chr7 (1 HSPs)
chr7 (300-407)||(14677131-14677238)
[»] chr5 (1 HSPs)
chr5 (300-407)||(17667111-17667218)
[»] chr6 (1 HSPs)
chr6 (10-81)||(10812306-10812377)
[»] chr1 (1 HSPs)
chr1 (170-402)||(42602772-42603004)
[»] chr3 (1 HSPs)
chr3 (258-405)||(25601669-25601816)


Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 10 - 546
Target Start/End: Original strand, 36617265 - 36617801
Alignment:
Q  10 gcagagatgtaagattcttgcatgaagaaacacattgcataatgagaccattatccttgtgaacaaagattcttaatcgttggagtttggttttatggga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  36617265 gcagagatgtaagattcttgcatgaagaaacacattgcataatgagaccattatcattatgaacaaagattcttaatcgttggagtttggttttatggga 36617364  T
Q  110 ataaacataatctaaaatcttttggaggagttgatgctccattttgccgatatgatcaaaatcaagagagtgcagtgcaattgtgttatcacggagagtc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36617365 ataaacataatctaaaatcttttggaggagttgatgctccattttgccgatatgatcaaaatcaagagagtgtagtgcaattgtgttatcacggagagtc 36617464  T
Q  210 aagattttagacatgaatatttcaaattgcctaacagtgtcgaatattgaggaatccaatacaagagtaggaatatgtttccatttatctttccatcttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36617465 aagattttagacatgaatatttcaaattgcctaacagtgtcgaatcttgaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttc 36617564  T
Q  310 tagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacgaaggataacactgttaggtaagtcactcaacctatcttcatattc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36617565 tagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacaaaggataacactgttaggtaagtcactcaacctatcttcatattc 36617664  T
Q  410 ttcattattctcattttctgcaatgtaatggaacaaggaaagattgagtaactatacaatgatcattcaaggcaaagcaaagtttcaggatcgattcaac 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36617665 ttcattattctcattttctgcaatgtaatggaacaaggaaagattgagtaactatacaatgatcattcaaggcaaagcaaagtttcaagatcgattcaac 36617764  T
Q  510 cattaagcgagtaaaacccttttctttatgccctaat 546  Q
    ||||| | ||||||||||||||| |||||||||||||    
T  36617765 cattaggtgagtaaaacccttttatttatgccctaat 36617801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 514
Target Start/End: Complemental strand, 18083416 - 18082912
Alignment:
Q  10 gcagagatgtaagattcttgcatgaagaaacacattgcataatgagaccattatccttgtgaacaaagattcttaatcgttggagtttggttttatggga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  18083416 gcagagatgtaagattcttgcatgaagaaacacattgcataatgagaccattatcattatgaacaaagattcttaatcgttggagtttggttttatggga 18083317  T
Q  110 ataaacataatctaaaatcttttggaggagttgatgctccattttgccgatatgatcaaaatcaagagagtgcagtgcaattgtgttatcacggagagtc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18083316 ataaacataatctaaaatcttttggaggagttgatgctccattttgccgatatgatcaaaatcaagagagtgtagtgcaattgtgttatcacggagagtc 18083217  T
Q  210 aagattttagacatgaatatttcaaattgcctaacagtgtcgaatattgaggaatccaatacaagagtaggaatatgtttccatttatctttccatcttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18083216 aagattttagacatgaatatttcaaattgcctaacagtgtcgaatcttgaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttc 18083117  T
Q  310 tagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacgaaggataacactgttaggtaagtcactcaacctatcttcatattc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18083116 tagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacaaaggataacactgttaggtaagtcactcaacctatcttcatattc 18083017  T
Q  410 ttcattattctcattttctgcaatgtaatggaacaaggaaagattgagtaactatacaatgatcattcaaggcaaagcaaagtttcaggatcgattcaac 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18083016 ttcattattctcattttctgcaatgtaatggaacaaggaaagattgagtaactatacaatgatcattcaaggcaaagcaaagtttcaagatcgattcaac 18082917  T
Q  510 catta 514  Q
    |||||    
T  18082916 catta 18082912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 102 - 404
Target Start/End: Original strand, 36636767 - 36637069
Alignment:
Q  102 ttatgggaataaacataatctaaaatcttttggaggagttgatgctccattttgccgatatgatcaaaatcaagagagtgcagtgcaattgtgttatcac 201  Q
    ||||||||  ||||||| | |||||||||||  ||||||||| |||| || || ||   | | |||| |||||||| |||||||||| ||| | ||||||    
T  36636767 ttatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcgtgcagtgcagttgaggtatcac 36636866  T
Q  202 ggagagtcaagattttagacatgaatatttcaaattgcctaacagtgtcgaatattgaggaatccaatacaagagtaggaatatgtttccatttatcttt 301  Q
    | |||||||| || |||||||  || ||  |||||||| ||||||||   ||| |||| | || ||| | |||||| |||||| |||||||   || | |    
T  36636867 gaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatgtct 36636966  T
Q  302 ccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacgaaggataacactgttaggtaagtcactcaacctatct 401  Q
    ||||||  |||||||||| |||||||  ||| ||| |||||| || ||||||||||||||  ||||||| | || ||  ||||||||||||| ||| |||    
T  36636967 ccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgtgaaggattataccgtcgggtaagtcactcagcctgtct 36637066  T
Q  402 tca 404  Q
    |||    
T  36637067 tca 36637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 55966820 - 55966878
Alignment:
Q  77 gattcttaatcgttggagtttggttttatgggaataaacataatctaaaatcttttgga 135  Q
    |||| ||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  55966820 gatttttaattgttggagttgggtattatgggaacaaacataatctaaaatcttttgga 55966878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 15582174 - 15582254
Alignment:
Q  277 taggaatatgtttccatttatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 357  Q
    ||||||||||||||||  |||  ||||||||| ||||||||||||||||||||||  | ||| | ||||||||||| ||||    
T  15582174 taggaatatgtttccaaatatgcttccatcttttagacaaaacgcaagttcgaacggcgtctatagtgtttaaaaaagaca 15582254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 36668679 - 36668732
Alignment:
Q  351 aatgacaaaatacgaaggataacactgttaggtaagtcactcaacctatcttca 404  Q
    |||||||||||  |||||||||||| || |||||||||||||| ||| ||||||    
T  36668679 aatgacaaaatttgaaggataacaccgtcaggtaagtcactcagcctgtcttca 36668732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 300 - 407
Target Start/End: Complemental strand, 14677238 - 14677131
Alignment:
Q  300 ttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacgaaggataacactgttaggtaagtcactcaacctat 399  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |||||||| || | |||||    
T  14677238 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaagtcgcttagcctat 14677139  T
Q  400 cttcatat 407  Q
    ||||||||    
T  14677138 cttcatat 14677131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 17667111 - 17667218
Alignment:
Q  300 ttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacgaaggataacactgttaggtaagtcactcaacctat 399  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||  |||||||  || | |||||    
T  17667111 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaagttgcttagcctat 17667210  T
Q  400 cttcatat 407  Q
    ||||||||    
T  17667211 cttcatat 17667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 10812377 - 10812306
Alignment:
Q  10 gcagagatgtaagattcttgcatgaagaaacacattgcataatgagaccattatccttgtgaacaaagattc 81  Q
    ||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  10812377 gcagagaagtaagatactgacatgaagaaacacattgcataatgagaccattatcattatgaacaaagattc 10812306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 402
Target Start/End: Original strand, 42602772 - 42603004
Alignment:
Q  170 atcaagagagtgcagtgcaattgtgttatcacggagagtcaagattttagacatgaatatttcaaattgcctaacagtgtcgaatattgaggaatccaat 269  Q
    ||||||||  ||||||||| ||| | ||||||| |||||||| || |||||||  |||||   ||| ||| | ||||||   ||  ||||||||||||||    
T  42602772 atcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaagtttgaggaatccaat 42602871  T
Q  270 acaagagtaggaatatgtttccatttatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgacaaaatacgaagga 369  Q
    | ||||||||||||| |||||||  ||   ||||||||| | ||||| | ||||||| ||||    | ||||| ||| | ||||||||||||  ||||||    
T  42602872 ataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggagttaagaaatgacaaaatgtgaagga 42602971  T
Q  370 taacactgttaggtaagtcactcaacctatctt 402  Q
    ||| || || |||||||||||||| ||| ||||    
T  42602972 taagacagtcaggtaagtcactcagcctgtctt 42603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 405
Target Start/End: Complemental strand, 25601816 - 25601669
Alignment:
Q  258 gaggaatccaatacaagagtaggaatatgtttccatttatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 357  Q
    ||||||| ||||| ||| || |||||| |||||||   ||  ||||||||| | ||||||| ||||||| ||||| ||| |||||| ||  |||||||||    
T  25601816 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagcatgtttggtattacaaaatgaca 25601717  T
Q  358 aaatacgaaggataacactgttaggtaagtcactcaacctatcttcat 405  Q
    ||||| |||||| ||||| ||  ||||| |||||||| || |||||||    
T  25601716 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 25601669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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