View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6378_low_23 (Length: 263)
Name: NF6378_low_23
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 42682038 - 42682182
Alignment:
| Q |
1 |
ctcgtaaaaacaagaaacaggaacnnnnnnnnctagttagtttttccttaacatgggttcagatcctttgtcactgaattcaacaaaaccaacacaaatt |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42682038 |
ctcgtaaaaacaagaaacagcaacaaaagaaactagttagtttttccttaacatgggttcagatcctttgtcactgaattcaacaaaaccaacacaaatt |
42682137 |
T |
|
| Q |
101 |
ccaactcaagatcaacaagaacatgattcaccatcatcatcatca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42682138 |
ccaactcaagatcaacaagaacatgattcaccatcatcatcatca |
42682182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University