View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_27 (Length: 246)
Name: NF6378_low_27
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_27 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7827800 - 7828030
Alignment:
| Q |
1 |
acaaaggcatcaaaggcctagaagatctccaaaagacacttctatgtcagatgggtgaagatattggaacaatggtgggaagtaatttcaaaggaagtgt |
100 |
Q |
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| T |
7827800 |
acaaaggcatcaaaggcctagaagatctccaaaagacacttctatgtcagatgggtgaagatattggaacaatggtgggaagtaatttcaaatgaagtgt |
7827899 |
T |
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| Q |
101 |
tgaaatcaaacgcagacttgcaagagaagagttcttctggttttggatgatattgatagcatagaaaaattgaacttattggctggaggacgtgattggt |
200 |
Q |
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| T |
7827900 |
tgaaatcaaacgcagacttgcaagagaagagttcttctggttttggatgatattgatagcatagaaaaattgaacttattggctggaggacgtgattggt |
7827999 |
T |
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| Q |
201 |
ttggttctggtagtaggatcataataacaac |
231 |
Q |
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| T |
7828000 |
ttggttctggtagtaggatcataataacaac |
7828030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 7824555 - 7824658
Alignment:
| Q |
127 |
aagagttcttctggttttggatgatattgatagcatagaaaaattgaacttattggctggaggacgtgattggtttggttctggtagtaggatcataata |
226 |
Q |
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| T |
7824555 |
aagagttcttctggttttggataatattgacagcgtagaaaaatataacttgttggctggagaacacgactggtttgcttctggtagctggatgatatta |
7824654 |
T |
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| Q |
227 |
acaa |
230 |
Q |
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|||| |
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| T |
7824655 |
acaa |
7824658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 7815063 - 7815166
Alignment:
| Q |
127 |
aagagttcttctggttttggatgatattgatagcatagaaaaattgaacttattggctggaggacgtgattggtttggttctggtagtaggatcataata |
226 |
Q |
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| T |
7815063 |
aagagttcttctggttttgaataatattgacagcgtagaaaaatataacttgttggcttgagaacgcgactggtttgcttctggtagctggatgatatta |
7815162 |
T |
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| Q |
227 |
acaa |
230 |
Q |
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|||| |
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| T |
7815163 |
acaa |
7815166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 7838404 - 7838341
Alignment:
| Q |
168 |
aattgaacttattggctggaggacgtgattggtttggttctggtagtaggatcataataacaac |
231 |
Q |
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||||||| | ||| |||||||||| ||||||||||||||||||||| || ||||| ||||||| |
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| T |
7838404 |
aattgaaatcattagctggaggacatgattggtttggttctggtagcagaatcattgtaacaac |
7838341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 57454 - 57418
Alignment:
| Q |
179 |
ttggctggaggacgtgattggtttggttctggtagta |
215 |
Q |
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| T |
57454 |
ttggctggaggacttgattggtttggtcctggtagta |
57418 |
T |
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