View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_28 (Length: 243)

Name: NF6378_low_28
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_28
NF6378_low_28
[»] chr5 (1 HSPs)
chr5 (1-236)||(35917460-35917695)
[»] chr8 (1 HSPs)
chr8 (121-164)||(18548877-18548920)
[»] chr6 (1 HSPs)
chr6 (120-163)||(13498420-13498463)
[»] chr7 (1 HSPs)
chr7 (105-138)||(6528183-6528216)
[»] chr4 (2 HSPs)
chr4 (119-164)||(4592697-4592742)
chr4 (115-164)||(43913420-43913469)
[»] chr2 (1 HSPs)
chr2 (119-164)||(27957062-27957107)
[»] chr3 (1 HSPs)
chr3 (105-161)||(39639856-39639912)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35917460 - 35917695
Alignment:
Q  1 atttcttagtgtagcttaaactaaaaaatagccatacctaacgctctactagaaaagttagggaacccataattgagggataaaattcctcccacaacgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35917460 atttcttagtgtagcttaaactaaaaaatagccatacctaacgctctactagaaaagttaaggaacccataattgagggataaaattcctcccacaacgt 35917559  T
Q  101 caaccattttgaatcaatttaaaacttttaaaatataggagaccgatttaaaacctaaaataaatggcaaatcctttacaaagtattgttgttcaaacac 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35917560 caaccattttgaatcaatttaaaacttttaaaatatagtagaccaatttaaaacctaaaataaatggccaatcctttacaaagtattgttgttcaaacac 35917659  T
Q  201 tatatatgtttgagtgggttatcaatatattttact 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  35917660 tatatatgtttgagtgggttatcaatatattttact 35917695  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 18548877 - 18548920
Alignment:
Q  121 aaaacttttaaaatataggagaccgatttaaaacctaaaataaa 164  Q
    ||||||||||||||||| |||||| | |||||||||||||||||    
T  18548877 aaaacttttaaaatataagagaccaacttaaaacctaaaataaa 18548920  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 13498420 - 13498463
Alignment:
Q  120 taaaacttttaaaatataggagaccgatttaaaacctaaaataa 163  Q
    |||||||||||||| ||| |||||||| ||||||||||||||||    
T  13498420 taaaacttttaaaacataagagaccgacttaaaacctaaaataa 13498463  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 6528216 - 6528183
Alignment:
Q  105 cattttgaatcaatttaaaacttttaaaatatag 138  Q
    ||||||||| ||||||||||||||||||||||||    
T  6528216 cattttgaaccaatttaaaacttttaaaatatag 6528183  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 4592697 - 4592742
Alignment:
Q  119 ttaaaacttttaaaatataggagaccgatttaaaacctaaaataaa 164  Q
    ||||||||||||||| ||| |||||| | |||||||||||||||||    
T  4592697 ttaaaacttttaaaacataagagaccaacttaaaacctaaaataaa 4592742  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 43913469 - 43913420
Alignment:
Q  115 caatttaaaacttttaaaatataggagaccgatttaaaacctaaaataaa 164  Q
    ||||||||||||||||||||||| | |||| | |||||| ||||||||||    
T  43913469 caatttaaaacttttaaaatataagggaccaacttaaaaactaaaataaa 43913420  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 27957062 - 27957107
Alignment:
Q  119 ttaaaacttttaaaatataggagaccgatttaaaacctaaaataaa 164  Q
    ||||||||||||||||||| |||||| | || ||||||||||||||    
T  27957062 ttaaaacttttaaaatataagagacctacttgaaacctaaaataaa 27957107  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 39639856 - 39639912
Alignment:
Q  105 cattttgaatcaatttaaaacttttaaaatataggagaccgatttaaaacctaaaat 161  Q
    ||||||| ||||||||  ||||||||||||||| | |||| | ||||||||||||||    
T  39639856 cattttggatcaatttgtaacttttaaaatataagggaccaacttaaaacctaaaat 39639912  T

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