View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_29 (Length: 242)
Name: NF6378_low_29
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_29 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 40924230 - 40923998
Alignment:
| Q |
10 |
catcatcatcaaactattcattgaaacattcagtgctaaaagggatataaagaaagcttaatggataatcactaacattatagcttaacaacttcaatac |
109 |
Q |
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| T |
40924230 |
catcatcatcaaactattcattgaaacattcagtgctaaaaaggatatatagaaagcttaatggataatcactaacattatagcttaacaacttcaatac |
40924131 |
T |
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| Q |
110 |
tatatacaacatgcaaggcttaggtgtaaacagcatatatgatttccaccaacagagttagataaaagataaccgacatacccatgcaacaagattttgt |
209 |
Q |
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| T |
40924130 |
tatatacaacatgcaaggcttaggtgtaaacagcatatatgatttccaccaacagagttagataaaagataaccgacatacccatgcaacaagattttgt |
40924031 |
T |
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| Q |
210 |
tctttagcaggtttactagggtctaaggccttt |
242 |
Q |
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| T |
40924030 |
tctttagcaggtttactagggtcgaaggccttt |
40923998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 40934094 - 40933908
Alignment:
| Q |
12 |
tcatcatcaaactattcattgaaacatt----cagtgctaaaagggatataaagaaagcttaatggataatcactaacattatagcttaacaacttcaat |
107 |
Q |
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||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||| |
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| T |
40934094 |
tcatcataaaactattcattgaaacatttgttcagttctaaaagggatatatagaaagcttaatgaataatcacttacattatagcctaacaacttcaat |
40933995 |
T |
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| Q |
108 |
actatatacaacatgcaaggcttaggtgtaaacagcatatatgatttccaccaacagagttagataaaagataaccgacatacccat |
194 |
Q |
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| T |
40933994 |
actatatacaacattgaaggcttaggtataaacggcatatatgatttccaacaatatagttagataaaagttaactgacatacccat |
40933908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 40907600 - 40907514
Alignment:
| Q |
136 |
taaacagcatatatgatttccaccaacagagttagataaaagataaccgacatacccatgcaacaagattttgttctttagcaggttt |
223 |
Q |
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| T |
40907600 |
taaacaacagatatgatttcccgcaacagaattaggtaaaagataata-acatacccatgcaactagattttgttctttagcaggttt |
40907514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 55064078 - 55063845
Alignment:
| Q |
11 |
atcatcatcaaactattcattgaaacatt----cagtgctaaaagggatataaagaaagcttaatggataatcactaacattatagcttaacaacttcaa |
106 |
Q |
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| T |
55064078 |
atcatcatcaaactattcaatgaaacatttgttcagtgctaaataggatatatgggaagcttaatggataaccacttatattctagcttaacaacttcaa |
55063979 |
T |
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| Q |
107 |
tactatatacaacatgcaaggcttaggtgtaaacagcatatatgatttccaccaacagagttagataaaagataaccgacatacccatgcaacaagattt |
206 |
Q |
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| T |
55063978 |
tattttatacaacatgcaaggcttaggtataaacaacatatatgatttcca--actagagtttggtaaaagataattgacatacccattcgactactttt |
55063881 |
T |
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| Q |
207 |
tgttctttagcaggtttactagggtctaaggccttt |
242 |
Q |
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| T |
55063880 |
tgttctttaacaggtcttctatggtcaaaggccttt |
55063845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 7219265 - 7219195
Alignment:
| Q |
117 |
aacatgcaaggcttaggtgtaaacagcatatatgatttccaccaacagagttagataaaagataaccgaca |
187 |
Q |
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| T |
7219265 |
aacatgcaagactaaggtttaaacaacatacatgatttacaacaacagaattaggtaaaagataactgaca |
7219195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 7316782 - 7316847
Alignment:
| Q |
117 |
aacatgcaaggcttaggtgtaaacagcatatatgatttccaccaacagagttagataaaagataac |
182 |
Q |
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|||||||||| || |||| |||||| |||| ||||||| || ||||||| |||| ||||||||||| |
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| T |
7316782 |
aacatgcaagactaaggtataaacaacatacatgatttacaacaacagaattaggtaaaagataac |
7316847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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