View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_30 (Length: 240)
Name: NF6378_low_30
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 28609645 - 28609834
Alignment:
| Q |
17 |
agtagctgcttgaatgaaaattgcacatgctgtgtttagccattggcatatcaataaatctagatgtagatcatccattttcacactttatatatttata |
116 |
Q |
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| T |
28609645 |
agtagctgcttgaatgaaaattgcacatgctgtgtttagccattggcatatcaataaat--------------tccattttcacactttatatatttata |
28609730 |
T |
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| Q |
117 |
catttaggtttctatattcctataattgatgnnnnnnnnccttcttcataattctatgtcctacatgtcaccaaaattatccccatccagcctcctctcc |
216 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609731 |
catttaggtttctatattcctataattgatgttttttttccttcttcataattctatgtcctacatgtcaccaaaattatccccatccagcctcctctcc |
28609830 |
T |
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