View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_31 (Length: 240)
Name: NF6378_low_31
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 27206239 - 27206062
Alignment:
| Q |
47 |
accaactctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
146 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206239 |
accatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccactacaaacaacaattttttgaagaagctat |
27206140 |
T |
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| Q |
147 |
cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaata |
224 |
Q |
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| T |
27206139 |
cacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaata |
27206062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 13003415 - 13003588
Alignment:
| Q |
52 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
151 |
Q |
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| T |
13003415 |
ctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgattttttgaagaagctgtcacat |
13003514 |
T |
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| Q |
152 |
tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataa |
225 |
Q |
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| T |
13003515 |
tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataa |
13003588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 31252171 - 31251998
Alignment:
| Q |
52 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
151 |
Q |
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| T |
31252171 |
ctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccactataaacaatgagtttttgaagaagctgtcacat |
31252072 |
T |
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| Q |
152 |
tctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaaaaataa |
225 |
Q |
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|||||||||||| || |||||||| |||||||||||||| || | || |||| |||||| ||| |||||||||| |
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| T |
31252071 |
tctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacacaaaaataa |
31251998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 31094209 - 31094350
Alignment:
| Q |
52 |
ctctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacat |
151 |
Q |
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|||| ||| ||||||||||||||| |||||| | | |||| | ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
31094209 |
ctcttgcagttctgtaatagttttgaaaagatggtaaaaaatatcatttccaccaatctctcccactataaacaacgattttttgaagaagctatcacat |
31094308 |
T |
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| Q |
152 |
tctgtgaactcac---aacaaaacaaatgttttgttagtcat |
190 |
Q |
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| T |
31094309 |
tctgtgaactcacaagaagaaaaaaaaagttttgttagtcat |
31094350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 16162891 - 16162788
Alignment:
| Q |
53 |
tctcgcaattctgtaatagttttagaaagatcgaataaaacgttatttctaccaatctctcccactacaaacaacaattttttgaagaagctatcacatt |
152 |
Q |
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||||||| |||||||||||||||||||| || || ||||| | ||||| |||||| |||||||||| ||| || || |||||||||||||||||| | |
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| T |
16162891 |
tctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaataatgatcgtttgaagaagctatcacact |
16162792 |
T |
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| Q |
153 |
ctgt |
156 |
Q |
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|||| |
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| T |
16162791 |
ctgt |
16162788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 27206481 - 27206427
Alignment:
| Q |
1 |
tgacaataagtgagcagtacaccctattgaaaatttccctgaaaccaccaactct |
55 |
Q |
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||||||||||||||||||||| ||||||| || |||||| |||||||||||||| |
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| T |
27206481 |
tgacaataagtgagcagtacatcctattgggaagttccctaaaaccaccaactct |
27206427 |
T |
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