View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6378_low_33 (Length: 238)
Name: NF6378_low_33
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 32805372 - 32805155
Alignment:
| Q |
6 |
agagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
32805372 |
agagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctatgtagttattg |
32805273 |
T |
|
| Q |
106 |
aacctgctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaacagtagcatcaccactgagacctcctcccggaatgttga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32805272 |
aacctgctaaaaataagaccccggtcccactgatttgtatccctatcaattaattctgcaacagtagcatcaccactgagacctcctcccggattgttga |
32805173 |
T |
|
| Q |
206 |
gaagaaaaccattggaac |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32805172 |
gaagaaaaccattggaac |
32805155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 6095545 - 6095762
Alignment:
| Q |
6 |
agagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6095545 |
agagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgttg |
6095644 |
T |
|
| Q |
106 |
aacctgctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaacagtagcatcaccactgagacctcctcccggaatgttga |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
6095645 |
aacctactaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaatagtagcatcaccactaagacctcctcccggattgttga |
6095744 |
T |
|
| Q |
206 |
gaagaaaaccattggaac |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6095745 |
gaagaaaaccattggaac |
6095762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University