View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_34 (Length: 237)
Name: NF6378_low_34
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35917336 - 35917116
Alignment:
| Q |
1 |
atgttagttggatcatgacactccacgttcgacttccatttcctttcctcgatatgacttgttgatagtatccttggtgcgtgcgcaactccaaagtttg |
100 |
Q |
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| T |
35917336 |
atgttagttggatcatgacactccacgttcgacttccatttcctttccttgatatgatttgttgatagtatccttggtgcgtgcgcaactccaaagtttg |
35917237 |
T |
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| Q |
101 |
tcagtgatgtttcgagtatagattgagggtttatcgcatcattgtctagtcccgctaaatttcgacttagttctgagttagtgaccttgagaaagaatta |
200 |
Q |
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| T |
35917236 |
tcagtgatgtttcgagtatagattgagggtttatcgcatcattgtctaatcccgctaaatttcaactcaattctaagttagtgaccttgagaaagaatta |
35917137 |
T |
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| Q |
201 |
gttccctttgcttgggtgatct |
222 |
Q |
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|||||| ||||||||||||||| |
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| T |
35917136 |
gttccc-ttgcttgggtgatct |
35917116 |
T |
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Back To:
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 35413949 - 35413894
Alignment:
| Q |
2 |
tgttagttggatcatgacactccacgttcgacttccatttcctttcctcgatatga |
57 |
Q |
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||||||| |||||||||||| |||||||||||||| ||||||| ||||||| |||| |
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| T |
35413949 |
tgttagtgggatcatgacaccccacgttcgacttcaatttcctctcctcgacatga |
35413894 |
T |
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