View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_36 (Length: 220)

Name: NF6378_low_36
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_36
NF6378_low_36
[»] chr7 (34 HSPs)
chr7 (148-220)||(18951422-18951494)
chr7 (28-89)||(18986864-18986925)
chr7 (28-89)||(19001492-19001553)
chr7 (148-220)||(47203017-47203089)
chr7 (148-220)||(8155428-8155500)
chr7 (1-51)||(18951565-18951615)
chr7 (148-220)||(3304302-3304374)
chr7 (148-220)||(31643577-31643649)
chr7 (148-220)||(36468105-36468177)
chr7 (148-220)||(42925194-42925266)
chr7 (148-220)||(43737621-43737693)
chr7 (148-220)||(24041746-24041818)
chr7 (148-220)||(37517819-37517891)
chr7 (148-220)||(3936517-3936587)
chr7 (153-220)||(9152322-9152387)
chr7 (148-220)||(19225154-19225226)
chr7 (158-220)||(6467859-6467921)
chr7 (148-218)||(26554721-26554791)
chr7 (148-220)||(19818909-19818979)
chr7 (148-213)||(36629736-36629801)
chr7 (30-89)||(13287830-13287888)
chr7 (154-220)||(24689892-24689958)
chr7 (28-89)||(26249195-26249256)
chr7 (148-220)||(31985098-31985170)
chr7 (42-89)||(2927804-2927851)
chr7 (148-218)||(36408886-36408956)
chr7 (28-89)||(11804615-11804675)
chr7 (28-89)||(20597516-20597577)
chr7 (148-209)||(28230054-28230115)
chr7 (148-220)||(42864658-42864728)
chr7 (41-89)||(9978214-9978262)
chr7 (1-33)||(18978736-18978768)
chr7 (1-33)||(18996266-18996298)
chr7 (155-220)||(33573608-33573669)
[»] chr8 (23 HSPs)
chr8 (148-220)||(21004849-21004921)
chr8 (148-220)||(8885007-8885079)
chr8 (148-220)||(42280456-42280528)
chr8 (148-220)||(3095221-3095293)
chr8 (148-220)||(9074061-9074133)
chr8 (148-220)||(11697874-11697946)
chr8 (148-220)||(14163605-14163677)
chr8 (28-89)||(28621521-28621581)
chr8 (148-220)||(27927507-27927579)
chr8 (148-220)||(31519443-31519515)
chr8 (148-220)||(40995190-40995262)
chr8 (148-220)||(44106747-44106819)
chr8 (153-220)||(17119427-17119494)
chr8 (148-220)||(28917311-28917383)
chr8 (159-220)||(34853861-34853920)
chr8 (148-220)||(11698602-11698674)
chr8 (30-86)||(21230844-21230899)
chr8 (148-220)||(21594312-21594384)
chr8 (159-220)||(34854245-34854304)
chr8 (28-89)||(15176552-15176612)
chr8 (28-89)||(18570445-18570506)
chr8 (28-89)||(20400250-20400311)
chr8 (28-89)||(26829586-26829647)
[»] chr5 (25 HSPs)
chr5 (148-220)||(38872151-38872223)
chr5 (148-220)||(31928681-31928753)
chr5 (148-220)||(38692349-38692421)
chr5 (148-220)||(26189872-26189944)
chr5 (148-220)||(33488104-33488176)
chr5 (148-220)||(4064351-4064423)
chr5 (148-220)||(7884694-7884766)
chr5 (148-220)||(15799726-15799798)
chr5 (148-220)||(26898352-26898424)
chr5 (148-220)||(29863053-29863125)
chr5 (148-220)||(31220894-31220966)
chr5 (148-220)||(37183343-37183415)
chr5 (148-209)||(12464672-12464733)
chr5 (148-220)||(20892106-20892178)
chr5 (148-220)||(38372800-38372872)
chr5 (153-220)||(32841530-32841597)
chr5 (173-220)||(38030815-38030862)
chr5 (150-220)||(15958249-15958319)
chr5 (28-89)||(20860255-20860316)
chr5 (148-220)||(39525250-39525321)
chr5 (148-218)||(12847912-12847982)
chr5 (148-220)||(24203278-24203348)
chr5 (148-204)||(6800519-6800575)
chr5 (148-204)||(11185756-11185812)
chr5 (148-220)||(28445044-28445116)
[»] chr3 (32 HSPs)
chr3 (148-220)||(2358170-2358242)
chr3 (148-220)||(8657655-8657727)
chr3 (159-220)||(3938728-3938789)
chr3 (148-220)||(47739493-47739565)
chr3 (148-220)||(41301434-41301506)
chr3 (148-220)||(49095766-49095838)
chr3 (148-220)||(46622359-46622429)
chr3 (148-220)||(26053294-26053366)
chr3 (148-220)||(39150312-39150384)
chr3 (148-220)||(47302534-47302606)
chr3 (148-220)||(50716781-50716853)
chr3 (148-220)||(50795994-50796066)
chr3 (153-220)||(3902364-3902431)
chr3 (42-89)||(8770494-8770541)
chr3 (28-89)||(8765590-8765651)
chr3 (28-85)||(12771326-12771382)
chr3 (148-220)||(41485851-41485921)
chr3 (148-220)||(500735-500807)
chr3 (148-204)||(51540200-51540256)
chr3 (159-220)||(3351617-3351678)
chr3 (28-89)||(19533698-19533759)
chr3 (28-89)||(19573695-19573756)
chr3 (148-220)||(35142610-35142680)
chr3 (148-220)||(47130871-47130943)
chr3 (30-89)||(2166154-2166212)
chr3 (42-89)||(18747736-18747783)
chr3 (148-220)||(33439706-33439780)
chr3 (148-218)||(28873537-28873607)
chr3 (28-89)||(19170261-19170321)
chr3 (148-220)||(38977304-38977374)
chr3 (148-204)||(14828491-14828547)
chr3 (184-220)||(52777784-52777820)
[»] chr2 (20 HSPs)
chr2 (148-220)||(36948676-36948748)
chr2 (148-220)||(33452012-33452084)
chr2 (148-220)||(42894909-42894981)
chr2 (148-220)||(32187434-32187506)
chr2 (148-220)||(44465304-44465376)
chr2 (148-212)||(8450827-8450891)
chr2 (148-220)||(17474345-17474417)
chr2 (153-220)||(45153455-45153522)
chr2 (148-220)||(4268171-4268243)
chr2 (148-220)||(38065128-38065200)
chr2 (148-216)||(38308399-38308467)
chr2 (148-220)||(41509983-41510055)
chr2 (153-220)||(25217326-25217393)
chr2 (159-220)||(39447690-39447751)
chr2 (169-220)||(16749998-16750049)
chr2 (42-89)||(22568984-22569031)
chr2 (42-89)||(27907642-27907689)
chr2 (148-218)||(34517643-34517711)
chr2 (148-218)||(27671034-27671104)
chr2 (28-89)||(20852998-20853059)
[»] scaffold0027 (1 HSPs)
scaffold0027 (148-220)||(141552-141624)
[»] scaffold0018 (1 HSPs)
scaffold0018 (148-220)||(173917-173989)
[»] chr6 (23 HSPs)
chr6 (148-220)||(32044752-32044824)
chr6 (153-220)||(17264956-17265023)
chr6 (148-220)||(7423440-7423512)
chr6 (148-220)||(13096696-13096768)
chr6 (148-220)||(7416315-7416387)
chr6 (148-220)||(9905593-9905665)
chr6 (148-220)||(24603920-24603991)
chr6 (148-217)||(33413194-33413263)
chr6 (153-220)||(4507860-4507925)
chr6 (148-220)||(5639633-5639705)
chr6 (148-218)||(23407276-23407346)
chr6 (148-218)||(29289257-29289327)
chr6 (148-218)||(29519813-29519883)
chr6 (148-220)||(3716849-3716921)
chr6 (148-216)||(5700135-5700203)
chr6 (170-217)||(2812797-2812844)
chr6 (28-89)||(14723601-14723661)
chr6 (148-220)||(2539983-2540057)
chr6 (42-89)||(21760527-21760574)
chr6 (148-220)||(1945132-1945202)
chr6 (148-205)||(13799107-13799164)
chr6 (48-89)||(22845971-22846012)
chr6 (148-204)||(14037542-14037598)
[»] chr4 (27 HSPs)
chr4 (148-220)||(6228372-6228444)
chr4 (148-220)||(17932694-17932766)
chr4 (148-220)||(34973399-34973471)
chr4 (148-220)||(41412771-41412843)
chr4 (148-220)||(25752004-25752076)
chr4 (148-220)||(27631924-27631996)
chr4 (148-220)||(46439840-46439912)
chr4 (148-220)||(8106920-8106992)
chr4 (148-220)||(25490939-25491011)
chr4 (152-220)||(47874261-47874329)
chr4 (148-220)||(48318640-48318711)
chr4 (148-218)||(3702815-3702885)
chr4 (158-220)||(32442363-32442425)
chr4 (155-220)||(53893575-53893640)
chr4 (148-220)||(7932143-7932215)
chr4 (148-220)||(40704471-40704543)
chr4 (148-220)||(55052243-55052315)
chr4 (148-218)||(38417298-38417368)
chr4 (153-220)||(49397555-49397622)
chr4 (148-220)||(27741708-27741780)
chr4 (148-220)||(38536719-38536791)
chr4 (169-220)||(2505585-2505636)
chr4 (148-199)||(23524327-23524378)
chr4 (148-205)||(4936298-4936355)
chr4 (28-89)||(7583709-7583769)
chr4 (159-220)||(54631047-54631108)
chr4 (42-86)||(18750754-18750798)
[»] chr1 (30 HSPs)
chr1 (148-220)||(667190-667262)
chr1 (148-220)||(32542744-32542816)
chr1 (148-220)||(32817363-32817435)
chr1 (148-220)||(18583101-18583173)
chr1 (148-220)||(23443263-23443335)
chr1 (148-220)||(34006797-34006869)
chr1 (148-220)||(44937846-44937918)
chr1 (148-220)||(45567458-45567530)
chr1 (148-220)||(52744412-52744484)
chr1 (148-220)||(17000843-17000915)
chr1 (148-220)||(41584155-41584227)
chr1 (148-220)||(49677977-49678049)
chr1 (153-220)||(33610958-33611025)
chr1 (148-220)||(42546464-42546534)
chr1 (148-220)||(4615413-4615485)
chr1 (153-220)||(45046419-45046484)
chr1 (153-220)||(40907486-40907553)
chr1 (148-220)||(34162345-34162417)
chr1 (148-220)||(40650261-40650333)
chr1 (148-220)||(49786812-49786884)
chr1 (28-85)||(18734709-18734766)
chr1 (28-89)||(20107771-20107831)
chr1 (170-218)||(6223310-6223358)
chr1 (148-212)||(15069477-15069541)
chr1 (148-220)||(44572664-44572736)
chr1 (30-89)||(22426635-22426693)
chr1 (186-220)||(7011783-7011817)
chr1 (28-89)||(18527616-18527677)
chr1 (32-89)||(26611451-26611508)
chr1 (148-220)||(38885747-38885817)
[»] scaffold0508 (1 HSPs)
scaffold0508 (148-220)||(2942-3014)
[»] scaffold0137 (1 HSPs)
scaffold0137 (153-220)||(9058-9125)
[»] scaffold0770 (1 HSPs)
scaffold0770 (148-220)||(4319-4391)
[»] scaffold0029 (1 HSPs)
scaffold0029 (148-220)||(102623-102695)
[»] scaffold0258 (1 HSPs)
scaffold0258 (28-89)||(20371-20432)
[»] scaffold0010 (1 HSPs)
scaffold0010 (171-220)||(141026-141075)
[»] scaffold0625 (1 HSPs)
scaffold0625 (1-33)||(358-390)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 18951494 - 18951422
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18951494 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctgattatacataagaattgtccggattat 18951422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 18986925 - 18986864
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18986925 tcaaaaacccctacaaatagctatgtttcaagaaaactagaattacaaactcaaatatagaa 18986864  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 19001553 - 19001492
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19001553 tcaaaaacccctacaaatagctatgtttcaagaaaactagaattacaaactcaaatatagaa 19001492  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 47203017 - 47203089
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47203017 aaagcaaaactcaaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 47203089  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 8155428 - 8155500
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  8155428 aaagcaaaactcaaaactgctgaaatgtgagagattctgatggctgattatacataagtattgtccggattat 8155500  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18951615 - 18951565
Alignment:
Q  1 cataaccaaaccacttctgtgttggtctcaaaaacccctacaaatagctat 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18951615 cataaccaaaccacttctgtgttggtctcaaaaacccctacaaatagctat 18951565  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 3304374 - 3304302
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||| |||||||||||||||||| |||||||||||||||| ||||||||||    
T  3304374 aaagcaaaactcaaaactgccgaaatatgagagattctgatggctgattatacataagaattatccggattat 3304302  T

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Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 31643577 - 31643649
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||| |||||||||||||||| | |||||||||||||||||||||||||||    
T  31643577 aaagcaaaactcaaaactgctgaaatatgagagattctgatggttgattatacataagaattgtccggattat 31643649  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 36468177 - 36468105
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  36468177 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggttgattatacataagaattgtccggattat 36468105  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 42925266 - 42925194
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42925266 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 42925194  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 43737621 - 43737693
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  43737621 aaagcaaaactcaaaactgttgaaatgtgagagagtctaatggctgattatacataagaattgtccggattat 43737693  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 24041818 - 24041746
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  24041818 aaagcaaaactcaaaactgataaaatgtgagagagtctgatggctgattatacataagaattgtcaggattat 24041746  T

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Target: chr7; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 37517891 - 37517819
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||| ||| |||||||||||||||||||| ||||||    
T  37517891 aaagcaaaactcaaaactgctgaaatgtgagagagtctgattgctgattatacataagaattgtccagattat 37517819  T

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Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 3936517 - 3936587
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||||||||   | |||||||||  |||||||||| |||||||||||||||||||||||||||    
T  3936517 aaagtaaaactcaaaactgcttacatgtgagag--tctgatggctgattatacataagaattgtccggattat 3936587  T

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Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 9152322 - 9152387
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||| |||||||  ||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  9152322 aaaacttaaaactgctgaaatgtgagag--tctgatggctgattatacataagaattgtccggattat 9152387  T

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Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 19225226 - 19225154
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  |||||||| |||| |||||||||| |||||||||||||||||||| ||||||    
T  19225226 aaagcaaaattcaaaactgctgaaatgtgggagagtctgatggctgattatacataagaattgtccagattat 19225154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 6467921 - 6467859
Alignment:
Q  158 tcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||  ||||||||||||| ||||||| || |||||||||||||||||| ||||||||    
T  6467921 tcaaaactgctgaaatgtgagagagtctgatgactgattatacataagaattgttcggattat 6467859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 26554791 - 26554721
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||  ||||||||||||| |||||||| |  ||||||||||| ||||||||||||    
T  26554791 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggttggttatacataagcattgtccggatt 26554721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 19818909 - 19818979
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||  |||||||  | |||||||||||||||||||||||||||    
T  19818909 aaagcaaaactcaaaactgttgaaatgtgagag--tctgatgcgtgattatacataagaattgtccggattat 19818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 36629736 - 36629801
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtcc 213  Q
    |||| ||||||||||||||  ||||||||||| | ||||||| || ||||||||||||||||||||    
T  36629736 aaagcaaaactcaaaactgctgaaatgtgagaaagtctgatgactgattatacataagaattgtcc 36629801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 13287888 - 13287830
Alignment:
Q  30 aaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||| ||||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  13287888 aaaaacccct-caaattgctatgtttcgggaaaactagaattacaaactcaaatatagaa 13287830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 24689958 - 24689892
Alignment:
Q  154 aaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||   ||||| | ||||| | |||||||| |||||||||||||||||||||||||||    
T  24689958 aaactcaaaactattgaaatatcagagagtttgatggctgattatacataagaattgtccggattat 24689892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 26249256 - 26249195
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||   |||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  26249256 tcaaaaaccccctaaaattgctatgttttaggaaaactagaattacaaactcaaatatagaa 26249195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 31985170 - 31985098
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||| |||||||||||| ||| |||||||||||| || || ||||||||    
T  31985170 aaagcaaaattcaaaactgctgaaatgtaagagattctgattgctgattatacataagcatagttcggattat 31985098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 2927804 - 2927851
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||| ||||||||||| |||||| ||||||| ||||||||||||||||    
T  2927804 aaattgctatgtttcaggaaaactagaattataaactcaaatatagaa 2927851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 36408886 - 36408956
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| |||||||||||||   ||||||||| ||| ||||||  || |||||||||||||||| ||||||||    
T  36408886 aaagcaaaactcaaaactactgaaatgtgaaagagtctgataactgattatacataagaattatccggatt 36408956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 11804615 - 11804675
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||| | |||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  11804615 tcaaaaaccccca-aaattgctatgtttcgggaaaactagaattacatactcaaatatagaa 11804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 20597516 - 20597577
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||   |||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  20597516 tcaaaaaccccctaaaattgctatgtttcgggaaaactagaattacagactcaaatatagaa 20597577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 28230115 - 28230054
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaatt 209  Q
    |||||||||||||||||||   |||||||||| | |||||||  | ||||||||||||||||    
T  28230115 aaagtaaaactcaaaactgctaaaatgtgagaaagtctgatgcatgattatacataagaatt 28230054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 42864728 - 42864658
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| ||||||| |  ||||||||||||  |||||||||| | ||||| |||||||||||||||||||    
T  42864728 aaagcaaaattcaaaacagctgaaatgtgagag--tctgatggctgaatatacttaagaattgtccggattat 42864658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 9978214 - 9978262
Alignment:
Q  41 caaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||| |||||||||||  ||||| ||||||||| ||||||||||||||    
T  9978214 caaattgctatgtttcagaaaaactagaattacagactcaaatatagaa 9978262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18978768 - 18978736
Alignment:
Q  1 cataaccaaaccacttctgtgttggtctcaaaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  18978768 cataaccaaacaacttctgtgttggtctcaaaa 18978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18996298 - 18996266
Alignment:
Q  1 cataaccaaaccacttctgtgttggtctcaaaa 33  Q
    |||||||||||||||||||||||||||| ||||    
T  18996298 cataaccaaaccacttctgtgttggtcttaaaa 18996266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 33573669 - 33573608
Alignment:
Q  155 aactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||  |||||||||||||||||||||||    |||| ||||||||||| ||||||||    
T  33573669 aacttaaaactgctgaaatgtgagagattctgatggc----tatatataagaattgttcggattat 33573608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 21004849 - 21004921
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  21004849 aaagtaaaactcaaaactgctgaaatgtgagagattctgatggttgattatacataagaattgtccggattat 21004921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 8885079 - 8885007
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  8885079 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 8885007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 42280528 - 42280456
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42280528 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 42280456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 3095221 - 3095293
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  3095221 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 3095293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 9074061 - 9074133
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  9074061 aaagcaaaattcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 9074133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 11697946 - 11697874
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  11697946 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaactgtccggattat 11697874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 14163677 - 14163605
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  14163677 aaagcaaaattcaaaactgctgaaatgtgagagagtctgatggctaattatacataagaattgtccgaattat 14163605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 28621521 - 28621581
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  28621521 tcaaaaaccccta-aaattgctatgtttcaagaaaactagaattacagactcaaatatagaa 28621581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 27927579 - 27927507
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   ||||||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  27927579 aaagcaaaactcaaaacttctgaaatgtgagagagtctgattgctgattatacataagaattgtctggattat 27927507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 31519515 - 31519443
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||||||||| ||||||| |||||  |||||||||||||| |||||    
T  31519515 aaagcaaaactcaaaactgctgaaatgtgagagattcagatggctgattatttataagaattgtccgaattat 31519443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 40995190 - 40995262
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||| ||  ||||||||||||| |||||||||| |||| |||||||||||||||| |||||    
T  40995190 aaagcaaaactcaaaattgctgaaatgtgagagagtctgatggctgattacacataagaattgtccgaattat 40995262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 44106747 - 44106819
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||  ||||||| || |||||||||||||||||||||||||||    
T  44106747 aaagcaaaactcaaaactgctaaaatgtgagagtgtctgatgactgattatacataagaattgtccggattat 44106819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 17119494 - 17119427
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| || |||||||||||||| |||||||||| |||||||||| ||||||| || |||||    
T  17119494 aaaactcaaaattgcagaaatgtgagagagtctgatggctgattatacatatgaattgttcgaattat 17119427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 28917311 - 28917383
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||| ||||||| ||||||| || ||||||||||||||||||  |||||||    
T  28917311 aaagcaaaactcaaaactgctgaaatttgagagagtctgatgactgattatacataagaattgtttggattat 28917383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 34853861 - 34853920
Alignment:
Q  159 caaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||  ||||||||||||  ||||||||||  ||||||||||||||||||||||||||    
T  34853861 caaaactgctgaaatgtgagag--tctgatggctggttatacataagaattgtccggattat 34853920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 11698602 - 11698674
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||| ||  |||||| |||| | |||||||||| |||||||||||||| | ||||||||||    
T  11698602 aaagcaaaactcaaaattgctgaaatgcgagatagtctgatggctgattatacataagaactatccggattat 11698674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 21230844 - 21230899
Alignment:
Q  30 aaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatata 86  Q
    ||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||||||    
T  21230844 aaaaaccccta-aaattgctatgtttcaggaaaactagaattacaaactaaaatata 21230899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 21594312 - 21594384
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| | |||| ||| ||||||| |||||||| | ||||||||    
T  21594312 aaagcaaaactcaaaactgctgaaatgtgagagagtttgattgctgattatacgtaagaatttttcggattat 21594384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 34854245 - 34854304
Alignment:
Q  159 caaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||  |||||||||||| ||  |||| || |||||||||||||||||||||||||||    
T  34854245 caaaactgctgaaatgtgagagttt--gatgactgattatacataagaattgtccggattat 34854304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 15176612 - 15176552
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||| |||| |||||||||   |||||| ||||||||| ||||||||||||||    
T  15176612 tcaaaaaccccta-aaattgctatgttttgggaaaactagaattacagactcaaatatagaa 15176552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 18570445 - 18570506
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||  ||||| |||||||||   |||||| ||||||||| ||||||||||||||    
T  18570445 tcaaaaaccccctcaaattgctatgttttgggaaaactagaattacagactcaaatatagaa 18570506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 20400250 - 20400311
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||   |||| ||||||||||  |||||| | ||||||||||||||||||||||    
T  20400250 tcaaaaaccccctaaaattgctatgtttcgggaaaactataattacaaactcaaatatagaa 20400311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 26829647 - 26829586
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||| ||||  ||||| |||||||||| ||||||| ||||||||| | ||||||||||||    
T  26829647 tcaaaacccccctcaaattgctatgtttcgagaaaactagaattacataatcaaatatagaa 26829586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 38872151 - 38872223
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38872151 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctaattatacataagaattgtccggattat 38872223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 31928753 - 31928681
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31928753 aaagcaaaattcaaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 31928681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 38692421 - 38692349
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  38692421 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 38692349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 26189944 - 26189872
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  26189944 aaagcaaaactcaaaactgctgaaatgtgagagattctgatggctgattaaacataagaattgtccgaattat 26189872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 33488104 - 33488176
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  33488104 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 33488176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 4064423 - 4064351
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  4064423 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatgactgattatacataagaattgtccggattat 4064351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 7884694 - 7884766
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||  ||||||||    
T  7884694 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgatcggattat 7884766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 15799726 - 15799798
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  15799726 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatgtctgattatacataagaattgtccggattat 15799798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 26898424 - 26898352
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  26898424 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatggctgattatacataagaattgtccagattat 26898352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 29863053 - 29863125
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  29863053 aaagcaaaactcaaaactgttaaaatatgagagagtctgatggctgattatacataagaattgtccggattat 29863125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 31220966 - 31220894
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| | |||| ||| |||||||||||||||||||||||||||    
T  31220966 aaagcaaaactcaaaactgctgaaatgtgagagagtttgattgctgattatacataagaattgtccggattat 31220894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 37183415 - 37183343
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  37183415 aaagcaaaactcaaaactactgaaatgtgagagagtttgatggctgattatacataagaattgtccggattat 37183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 12464733 - 12464672
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaatt 209  Q
    |||| ||||||||||||||  ||||||||||||||||||||| || ||||||||||||||||    
T  12464733 aaaggaaaactcaaaactgctgaaatgtgagagattctgatgactgattatacataagaatt 12464672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 20892106 - 20892178
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||| |||  ||||||||||||| | |||||||| ||||||| |||||||||||||||||||    
T  20892106 aaagcaaaactcaaagctgctgaaatgtgagagagtttgatggctgattatacctaagaattgtccggattat 20892178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 38372800 - 38372872
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||| |||||||||| ||||||| |||||||| ||||||||||    
T  38372800 aaagcaaaattcaaaactgttgaaatgtgagagagtctgatggctgattatacgtaagaattatccggattat 38372872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 32841597 - 32841530
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| ||  ||||||||||||| |||||| ||| |||||| ||||||||||||||||||||    
T  32841597 aaaactcaaaattgttgaaatgtgagagagtctgatagctgattatatataagaattgtccggattat 32841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 38030862 - 38030815
Alignment:
Q  173 tgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  38030862 tgtgagagattttgatggctgattatacataagaattgtccggattat 38030815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 15958249 - 15958319
Alignment:
Q  150 agtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||||   ||||||||||||| | |||||||||||||| |||||||||| | ||||||||    
T  15958249 agtaaaactcaaaactactgaaatgtgagagagtttgatggctaattatgcataagaattattcggattat 15958319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 20860255 - 20860316
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||   |||| |||||||||| ||||||| ||||||||| ||||||||||||||    
T  20860255 tcaaaaaccccctaaaattgctatgtttcgagaaaactagaattacagactcaaatatagaa 20860316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 39525250 - 39525321
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   ||||| | ||||| |||||||||| ||||||||| |||||||||||||||||    
T  39525250 aaagcaaaactcaaaactactgaaatataagagaatctgatggctgattatacat-agaattgtccggattat 39525321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 12847912 - 12847982
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||  ||| ||||||||| | |||||||| || ||||||||| ||||| ||||||    
T  12847912 aaagcaaaactcaaaactgttgaattgtgagagagtatgatggctgatcatacataagcattgttcggatt 12847982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 24203348 - 24203278
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||| |  ||||||||||||  |||||| | | |||||| ||||||||||||||||||||    
T  24203348 aaagcaaaactcaaaacagttgaaatgtgagag--tctgatagatgattatatataagaattgtccggattat 24203278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 6800575 - 6800519
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataa 204  Q
    |||| |||| |||||||||  ||||||||||||||||||||  || |||||||||||    
T  6800575 aaagcaaaattcaaaactgctgaaatgtgagagattctgattactgattatacataa 6800519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 11185812 - 11185756
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataa 204  Q
    ||||||||| |||||| ||  |||||| ||||||||||||| ||| |||||||||||    
T  11185812 aaagtaaaattcaaaattgctgaaatgagagagattctgattgctgattatacataa 11185756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 28445116 - 28445044
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||| ||| |||||| |||||||| |||| ||| |||||||||||| || ||||| |||||    
T  28445116 aaagcaaaattcaaaattggtgaaatgagagagattatgattgctgattatacataagcatagtccgaattat 28445044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 2358242 - 2358170
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2358242 aaagcaaaactcaaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 2358170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 8657655 - 8657727
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  8657655 aaagtaaaactcaaaactgctgaaatgtgagagattctgatggctgattatacatgagaattgtccggattat 8657727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 3938728 - 3938789
Alignment:
Q  159 caaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3938728 caaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 3938789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 47739565 - 47739493
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  47739565 aaagcaaaactcaaaactgctgaaatgtgagagagtctgattgctgattatacataagaattgtccggattat 47739493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 41301434 - 41301506
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||| ||||||||| |||||||| | |||||||||||||||||||||||||||    
T  41301434 aaagcaaaactcaaaactgttgaattgtgagagagtctgatggatgattatacataagaattgtccggattat 41301506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 49095838 - 49095766
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  49095838 aaagcaaaactcaaaactgcttaaatgtgagagagtctgatgactgattatacataagaattgtccggattat 49095766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 46622429 - 46622359
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||  |||||||||| ||||||||||||||||||||| |||||    
T  46622429 aaagcaaaactcaaaactgctgaaatgtgagag--tctgatggctgattatacataagaattgtccgaattat 46622359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 26053366 - 26053294
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||| ||| ||||||| || |||||| ||||||||||||||||||||    
T  26053366 aaagcaaaactcaaaactgttgaaatgtgatagagtctgatgactgattataaataagaattgtccggattat 26053294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 39150312 - 39150384
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||  || |||||||| | |||||||||||||||||||||||||||    
T  39150312 aaagcaaaactcaaaactgctgaaatgtgaaggagtctgatggatgattatacataagaattgtccggattat 39150384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 47302534 - 47302606
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||| |||||||||| |||| || |||||| ||||||||||||||||||||    
T  47302534 aaagcaaaactcaaaactgttgaaatatgagagattccgatgactgattatatataagaattgtccggattat 47302606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 50716781 - 50716853
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||| |||||||   |||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  50716781 aaagcaaaacttaaaactgttaaaatgtgagagagtctgatggttgattatacataagaattgtccggattat 50716853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 50796066 - 50795994
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||| |||||||   |||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  50796066 aaagcaaaacttaaaactgttaaaatgtgagagagtctgatggttgattatacataagaattgtccggattat 50795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 3902431 - 3902364
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||   |||| ||||||| |||||||||| |||||||||||||||||| ||||||||    
T  3902431 aaaactcaaaactgttaaaatttgagagagtctgatggctgattatacataagaattgttcggattat 3902364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 8770494 - 8770541
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  8770494 aaattgctatgtttcaagaaaactagaattacaaactcaaatatagaa 8770541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 8765590 - 8765651
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||   |||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  8765590 tcaaaaaccccctaaaattgctatgtttcaagaaaactagaattacagactcaaatatagaa 8765651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 12771382 - 12771326
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatat 85  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||    
T  12771382 tcaaaaaccccta-aaattgctatgtttcgagaaaactagaattacaaactcaaatat 12771326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 41485921 - 41485851
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||  |||||||| | |||||| ||||||||||||||||||||    
T  41485921 aaagcaaaactcaaaactgctgaaatgtgagag--tctgatggttgattatatataagaattgtccggattat 41485851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 500807 - 500735
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||| |||||||   |||||||| ||| |||||||||| |||||||||||||||||||| ||||||    
T  500807 aaagcaaaacttaaaactgttaaaatgtgatagagtctgatggctgattatacataagaattgtccagattat 500735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 51540256 - 51540200
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataa 204  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||    
T  51540256 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataa 51540200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 3351678 - 3351617
Alignment:
Q  159 caaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||  ||| ||||||||| |||||||| | |||||||||||||||||||| ||||||    
T  3351678 caaaactgctgaattgtgagagagtctgatggttgattatacataagaattgtccagattat 3351617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 19533698 - 19533759
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||  ||||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  19533698 tcaaaaaccccctcaaattgctatgtttcgggaaaactagaattacagactcaaatatagaa 19533759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 19573756 - 19573695
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||  ||||| ||||||||||| |||||| | |||||||||||||||| |||||    
T  19573756 tcaaaaaccccctcaaattgctatgtttcaggaaaactaaaattacaaactcaaatgtagaa 19573695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 35142610 - 35142680
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||  |||||||||| ||||| ||||||||||||||| |||||    
T  35142610 aaagcaaaattcaaaactgctgaaatgtgagag--tctgatggctgattatgcataagaattgtccgaattat 35142680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 47130871 - 47130943
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||| || || || | || ||||||||||||||||||| |||||||    
T  47130871 aaagaaaaactcaaaactgctgaaatgtgagggagtccgaagactgattatacataagaattgtctggattat 47130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 2166212 - 2166154
Alignment:
Q  30 aaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||| |||| ||||||||||  |||||| ||||||||||| ||||||||||||    
T  2166212 aaaaaccccta-aaattgctatgtttcgggaaaactagaattacaaattcaaatatagaa 2166154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 18747736 - 18747783
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||||||  |||||| ||||||||| ||||||||||||||    
T  18747736 aaatagctatgtttcgggaaaactagaattacatactcaaatatagaa 18747783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 33439706 - 33439780
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaat--tatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||| | ||  |||||||| ||||||||| ||||||    
T  33439706 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggttgattatatacatatgaattgtccagattat 33439780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 28873537 - 28873607
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||   |||||||||||| ||||||| |  | ||||||||| |||||||||||||    
T  28873537 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatgaccgactatacataaaaattgtccggatt 28873607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 19170321 - 19170261
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||  |||| ||||| ||||| |||||| ||||||||||||| ||||||||||    
T  19170321 tcaaaaaccccttaaaattgctat-tttcaggaaaactagaattacaaacttaaatatagaa 19170261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 38977374 - 38977304
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||| || ||  | |||||| | |||||||||||||||||||||||||||    
T  38977374 aaagcaaaactcaaaactgctgaaatgcgaaag--tgtgatggttgattatacataagaattgtccggattat 38977304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 14828547 - 14828491
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataa 204  Q
    |||| |||| |||||||||  |||||| ||||||||||||| ||| |||||||||||    
T  14828547 aaagcaaaattcaaaactgctgaaatgggagagattctgattgctgattatacataa 14828491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 52777784 - 52777820
Alignment:
Q  184 ctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  52777784 ctgatggctgattatacataagaattgtccgaattat 52777820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 36948748 - 36948676
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36948748 aaagcaaaactcaaaactgttgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 36948676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 33452084 - 33452012
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  33452084 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 33452012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 42894909 - 42894981
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  42894909 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 42894981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 32187506 - 32187434
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  32187506 aaagcaaaactcaaaactgttgaaatgtgagagagtctgatggctgattatacataagaattgtccgaattat 32187434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 44465376 - 44465304
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| | |||||||| |||||||||||||||||||||||||||    
T  44465376 aaagcaaaactcaaaactgctgaaatgtgagagagtttgatggctgattatacataagaattgtccggattat 44465304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 8450827 - 8450891
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtc 212  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||    
T  8450827 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtc 8450891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 17474417 - 17474345
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||| ||||||||| ||||||||    
T  17474417 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacacaagaattgttcggattat 17474345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 45153522 - 45153455
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||   ||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  45153522 aaaactcaaaactactgaaatgtgagagagtctgatggctgattatacataagaattgttcggattat 45153455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 4268243 - 4268171
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||| | |||||||||||||||||| | ||||||    
T  4268243 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggttgattatacataagaattgttcagattat 4268171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 38065200 - 38065128
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||| ||  ||||||||||||||||||| |||||||    
T  38065200 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatagcagattatacataagaattgtctggattat 38065128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 38308467 - 38308399
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccgga 216  Q
    |||| ||||||||||||||  ||||||||||||| | ||||| || |||||||||||||||||||||||    
T  38308467 aaagaaaaactcaaaactgctgaaatgtgagagagtttgatgactgattatacataagaattgtccgga 38308399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 41510055 - 41509983
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||| |||||||  | |||||||||||||||||||||||||||    
T  41510055 aaagcaaaattcaaaactgctgaaatgtgagagagtctgatgaatgattatacataagaattgtccggattat 41509983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 25217393 - 25217326
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||| |||||||  ||||||||||||| |||||||||| |||| ||||||||||||| ||||||||    
T  25217393 aaaacttaaaactgctgaaatgtgagagaatctgatggctgattacacataagaattgttcggattat 25217326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 39447690 - 39447751
Alignment:
Q  159 caaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||  ||||||||||||| ||||||| || |||||||||||||||||| ||||||||    
T  39447690 caaaactgttgaaatgtgagagactctgatgactgattatacataagaattgttcggattat 39447751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 16750049 - 16749998
Alignment:
Q  169 gaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| | |||||| ||| |||||||||||||||||||||||||||    
T  16750049 gaaatgtgagaaagtctgatagctgattatacataagaattgtccggattat 16749998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 22568984 - 22569031
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  22568984 aaattgctatgtttcgggaaaactagaattacaaactcaaatatagaa 22569031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 27907689 - 27907642
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  27907689 aaattgctatgtttcgggaaaactagaattacaaactcaaatatagaa 27907642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 34517643 - 34517711
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||  ||||||||||||  ||| ||| || |||||||||||| ||||||||||||    
T  34517643 aaagcaaaactcaaaactgctgaaatgtgagag--tctaatgactgattatacataagcattgtccggatt 34517711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 27671034 - 27671104
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||  ||||||||||||| ||||||| || ||| |||||||| || || ||||||    
T  27671034 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatgactgattttacataagcatcgttcggatt 27671104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 20852998 - 20853059
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||| ||||  |||| ||||||||||| |||||| | ||||||| ||||||||||||||    
T  20852998 tcaaaaaacccttaaaattgctatgtttcaggaaaactataattacagactcaaatatagaa 20853059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 141624 - 141552
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  141624 aaagcaaaactcaaaactgctgaaatatgagagagtctgatggctaattatacataagaattgtccggattat 141552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 173989 - 173917
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  173989 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 173917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 32044752 - 32044824
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32044752 aaagcaaaactcaaaactactgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 32044824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 17264956 - 17265023
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  17264956 aaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 17265023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 7423440 - 7423512
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  7423440 aaagcaaaactcaaaactgttgaaatgtgagagagtctgatggttgattatacataagaattgtccggattat 7423512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 13096696 - 13096768
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||| ||||||||||    
T  13096696 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattatccggattat 13096768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 7416315 - 7416387
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| | |||||||| ||||||||||| |||||||||||||||    
T  7416315 aaagcaaaactcaaaactgctgaaatgtgagagagtatgatggctgattatacataaaaattgtccggattat 7416387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 9905593 - 9905665
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||| ||| |||||||||| |||||||||||||||||| ||||||||    
T  9905593 aaagcaaaactcaaaactgctgaaatgtgaaagagtctgatggctgattatacataagaattgttcggattat 9905665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 24603991 - 24603920
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| ||||||||||    
T  24603991 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctaattat-cataagaattatccggattat 24603920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 33413263 - 33413194
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggat 217  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||||||| |||||    
T  33413263 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattacacataagaattgttcggat 33413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 4507925 - 4507860
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| ||  ||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  4507925 aaaactcaaaattgctgaaatgtgagag--tctgatggctgattatacataagaattgtccggattat 4507860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 5639633 - 5639705
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| ||||||||||| ||||||||| |||||    
T  5639633 aaagcaaaactcaaaactgctcaaatgtgagagagtctgatggctgattatacataaaaattgtccgaattat 5639705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 23407276 - 23407346
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||| ||   |||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  23407276 aaagcaaaactcaaaattgttaaaatatgagagagtctgatggctgattatacataagaattgtccggatt 23407346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 29289327 - 29289257
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| |||||||||||||   ||||| ||||||| |||||||||| |||||||||||| ||||||||||||    
T  29289327 aaagcaaaactcaaaactaatgaaatatgagagagtctgatggcttattatacataagcattgtccggatt 29289257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 29519813 - 29519883
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||  ||||| ||||||  ||||||| || |||||||||||||||||||||||||    
T  29519813 aaagcaaaactcaaaactgttgaaatatgagagggtctgatgacttattatacataagaattgtccggatt 29519883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 3716921 - 3716849
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||| ||   |||||||| ||| |||||||||| ||||||||||||||||||||| |||||    
T  3716921 aaagcaaaactcaaaattgttaaaatgtgaaagagtctgatggctgattatacataagaattgtccgaattat 3716849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 5700135 - 5700203
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccgga 216  Q
    |||| ||||||||||||||   |||| ||||||| |||||||||| ||| |||||||||||||||||||    
T  5700135 aaagcaaaactcaaaactgttaaaatttgagagagtctgatggctgattgtacataagaattgtccgga 5700203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 2812844 - 2812797
Alignment:
Q  170 aaatgtgagagattctgatggctaattatacataagaattgtccggat 217  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||    
T  2812844 aaatgtgagagagtctgatgactgattatacataagaattgtccggat 2812797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 14723601 - 14723661
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||| |||| |||||||||||  ||||| ||||||||| ||||||||||||||    
T  14723601 tcaaaaaccccta-aaattgctatgtttcagaaaaactagaattacagactcaaatatagaa 14723661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 2539983 - 2540057
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattat--acataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| | | |||| | |||||  ||||||||||||||||||||||    
T  2539983 aaagcaaaactcaaaactgctgaaatgtgagagagtgtaatggatgattatacacataagaattgtccggattat 2540057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 21760574 - 21760527
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  21760574 aaattgctatgtttcgcgaaaactagaattacaaactcaaatatagaa 21760527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 1945202 - 1945132
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||  ||||||| || |||||||||||||||| |||| |||||    
T  1945202 aaagcaaaagtcaaaactgccgaaatgtgagag--tctgatgactgattatacataagaattttccgaattat 1945132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 13799164 - 13799107
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataag 205  Q
    |||| |||| |||||||||  ||||||| |||||||||||| ||| ||||||||||||    
T  13799164 aaagcaaaattcaaaactgctgaaatgtaagagattctgattgctgattatacataag 13799107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 22846012 - 22845971
Alignment:
Q  48 ctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||||||| | ||||||| ||||||||||||||    
T  22846012 ctatgtttcaagaaaactataattacatactcaaatatagaa 22845971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 14037598 - 14037542
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataa 204  Q
    |||| |||| |||||||||  ||||| |||||||||||||| ||| |||||||||||    
T  14037598 aaagcaaaattcaaaactgctgaaatatgagagattctgattgctgattatacataa 14037542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 6228444 - 6228372
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  6228444 aaagcaaaactcaaaactgctgaaatgtgagagattatgatggctgattatacataagaattgtccggattat 6228372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 17932766 - 17932694
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  17932766 aaagaaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 17932694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 34973399 - 34973471
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34973399 aaagcaaaactcaaaactattgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 34973471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 41412843 - 41412771
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41412843 aaagcaaaactcaaaactactgaaatgtgagagattctgatggctgattatacataagaattgtccggattat 41412771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 25752076 - 25752004
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  25752076 aaagcaaaactcaaaactgttgaaatgtgagagagtctgatggctgattatacataagaattgttcggattat 25752004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 27631996 - 27631924
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  27631996 aaagcaaaactcaaaactactgaaatgtgaaagattctgatggctgattatacataagaattgtccggattat 27631924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 46439912 - 46439840
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||| ||||||||||    
T  46439912 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattttccggattat 46439840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 8106920 - 8106992
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||| ||||||||||||| ||||||    
T  8106920 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattataaataagaattgtccagattat 8106992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 25491011 - 25490939
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||| |||||||  ||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  25491011 aaagcaaaacttaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgttcggattat 25490939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 47874261 - 47874329
Alignment:
Q  152 taaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||||  ||||| ||||||| |||||| ||| |||||||||||||||||||||||||||    
T  47874261 taaaactcaaaactgctgaaatatgagagagtctgatagctgattatacataagaattgtccggattat 47874329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 48318711 - 48318640
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| ||||| |||| |||||||||||||||||||||||||||    
T  48318711 aaagcaaaactcaaaactgctgaaatgtgagagagtctga-ggctgattatacataagaattgtccggattat 48318640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 3702885 - 3702815
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||   |||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  3702885 aaagcaaaactcaaaactgcttaaatgtgagagagtctgatggctgattatccataagaattgtccggatt 3702815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 32442363 - 32442425
Alignment:
Q  158 tcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||  ||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  32442363 tcaaaactgctgaaatgtgagagattctgatggctggttatacataagaattgtccagattat 32442425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 53893640 - 53893575
Alignment:
Q  155 aactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||||||||||||| || |||||||    
T  53893640 aactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattttctggattat 53893575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 7932143 - 7932215
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||||||||||| ||||||| || |||||||||||||||||| ||||||||    
T  7932143 aaagcaaaattcaaaactgctgaaatgtgagagagtctgatgactgattatacataagaattgttcggattat 7932215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 40704471 - 40704543
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||||| |||| |||||||||| ||||||||||||| ||| |||||||||    
T  40704471 aaagcaaaactcaaaactgttgaaatgtgggagagtctgatggctgattatacataagagttgcccggattat 40704543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 55052315 - 55052243
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| ||||||| || |||||||||||||||| ||||||||||    
T  55052315 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatgactgattatacataagaattatccggattat 55052243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 38417298 - 38417368
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||| ||||||||||||||  ||||||| ||||| ||||||||||  ||||||||||||||||||| ||||    
T  38417298 aaaggaaaactcaaaactgttgaaatgtaagagagtctgatggctgcttatacataagaattgtcctgatt 38417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 49397555 - 49397622
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||   ||||| |||||||||||||||||| ||||||||||| |||| |||| |||||    
T  49397555 aaaactcaaaactactgaaatatgagagattctgatggctgattatacataaaaattatccgaattat 49397622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 27741780 - 27741708
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||| |||||||  ||||||||||||| ||||||| |  ||||||||||| |||||||||| ||||    
T  27741780 aaagaaaaactaaaaactgctgaaatgtgagagagtctgatgaccgattatacataaaaattgtccgggttat 27741708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 38536719 - 38536791
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| || |||| || |||||||||||||||| ||| ||||||    
T  38536719 aaagcaaaactcaaaactgttaaaatgtgagagagtccgatgactgattatacataagaattatccagattat 38536791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 2505636 - 2505585
Alignment:
Q  169 gaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||| | |||||||| |||||||||||||||| | ||||||||    
T  2505636 gaaatgtgagagagtttgatggctgattatacataagaattattcggattat 2505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 23524327 - 23524378
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattata 199  Q
    |||| |||||||||||||   |||||||||||||||||||||||| ||||||    
T  23524327 aaagcaaaactcaaaactaatgaaatgtgagagattctgatggctgattata 23524378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 4936355 - 4936298
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataag 205  Q
    |||| |||| |||||||||  |||||| ||||||||||||| ||||||| ||||||||    
T  4936355 aaagcaaaattcaaaactgctgaaatgggagagattctgattgctaattttacataag 4936298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 7583709 - 7583769
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||| |||||| |||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  7583709 tcaaaatccccta-aaattgctatgtttcgggaaaactagaattacagactcaaatatagaa 7583769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 54631108 - 54631047
Alignment:
Q  159 caaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||  ||||||||||||| | |||| | | |||||||||||||||| ||||||||||    
T  54631108 caaaactgctgaaatgtgagagagtgtgatagttgattatacataagaattctccggattat 54631047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 18750754 - 18750798
Alignment:
Q  42 aaatagctatgtttcaagaaaacaagaattacaaactcaaatata 86  Q
    |||| |||||||||| ||||||| ||||||||| |||||||||||    
T  18750754 aaattgctatgtttcgagaaaactagaattacatactcaaatata 18750798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 667190 - 667262
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  667190 aaagtaaaactcaaaactactgaaatgtgagagagtctgatggctaattatacataagaattgtccgaattat 667262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 32542744 - 32542816
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32542744 aaagcaaaactcaaaactgcttaaatgtgagagattctgatggctgattatacataagaattgtccggattat 32542816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 32817435 - 32817363
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  32817435 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattat 32817363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 18583173 - 18583101
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||||||||||||   |||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  18583173 aaagcaaaactcaaaactactgaaatgtgagagattctgatggctgattatacataagaattgttcggattat 18583101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 23443263 - 23443335
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||| ||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  23443263 aaagcaaaactcgaaactgctgaaatgtgagagattgtgatggctgattatacataagaattgtccggattat 23443335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 34006797 - 34006869
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||| |||| ||||||||||    
T  34006797 aaagtaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataaaaattatccggattat 34006869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 44937918 - 44937846
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||| ||||  ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  44937918 aaagcaaaactcaatactgctgaaatgtgagagattctgatgactgattatacataagaattgtccggattat 44937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 45567530 - 45567458
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  45567530 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggctgattacacataagaattgtccggattat 45567458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 52744484 - 52744412
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  52744484 aaagcaaaactcaaaactgctgaaatgtgaaagagtctgatggctgattatacataagaattgtccggattat 52744412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 17000843 - 17000915
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  17000843 aaagaaaaactcaaaactgttaaaatgtgagagagtctgatgactgattatacataagaattgtccggattat 17000915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 41584227 - 41584155
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  41584227 aaagcaaaactcaaaactgttaaaatgtgagagagtctgatgactgattatacataagaattgtccggattat 41584155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 49677977 - 49678049
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||| ||  ||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  49677977 aaagcaaaactcaaaattgctgaaatgtgagagagtctgatggctgataatacataagaattgtccggattat 49678049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 33611025 - 33610958
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||  ||||||||  |||||||||||||| ||||||||||||||||||||| |||||    
T  33611025 aaaactcaaaactgttgaaatgtggaagattctgatggctgattatacataagaattgtccgaattat 33610958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 42546464 - 42546534
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||  |||  ||||||||||||| |||||||||| ||||||||||||||||||| |||||||    
T  42546464 aaagtaaaactcaa--ctgctgaaatgtgagagagtctgatggctgattatacataagaattgtctggattat 42546534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 4615413 - 4615485
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| ||| |||||| |||||||| ||||||| ||||||||||    
T  4615413 aaagcaaaactcaaaactgttgaaatgtgagagagtctaatggctgattatacacaagaattatccggattat 4615485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 45046484 - 45046419
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||  ||||||||||||  |||||||||| ||||||||||| |||||||||||||||    
T  45046484 aaaactcaaaactgctgaaatgtgagag--tctgatggctgattatacataaaaattgtccggattat 45046419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 40907553 - 40907486
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| ||  ||||||||||||| ||||||| || ||||||||||| |||||||||||||||    
T  40907553 aaaactcaaaattgctgaaatgtgagagagtctgatgactgattatacataaaaattgtccggattat 40907486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 34162417 - 34162345
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||| ||||||| ||||||| || ||||||||||| |||||||||||||||    
T  34162417 aaagcaaaactcaaaactgttaaaatttgagagagtctgatgactgattatacataataattgtccggattat 34162345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 40650333 - 40650261
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||| ||  ||||||||||||| |||||| ||| |||| |||||||||||||| |||||||    
T  40650333 aaagcaaaactcaaaattgctgaaatgtgagagagtctgattgctgattaaacataagaattgtctggattat 40650261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 49786812 - 49786884
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| |||| |||||||||  ||||| ||| |||||||||||||| | ||||||| |||||||||||||||||    
T  49786812 aaagcaaaattcaaaactgctgaaatatgaaagattctgatggctgactatacattagaattgtccggattat 49786884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 18734766 - 18734709
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatat 85  Q
    ||||||||||| | |||| ||||||||||| |||||| ||||||||| ||||||||||    
T  18734766 tcaaaaacccccaaaaattgctatgtttcaggaaaactagaattacatactcaaatat 18734709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 20107771 - 20107831
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||||| |||| ||||||||||  |||||| | ||||||||||||||||||||||    
T  20107771 tcaaaaaccccta-aaattgctatgtttcgggaaaactataattacaaactcaaatatagaa 20107831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 6223358 - 6223310
Alignment:
Q  170 aaatgtgagagattctgatggctaattatacataagaattgtccggatt 218  Q
    |||||||||||| |||||||||| ||||| |||||||||||||| ||||    
T  6223358 aaatgtgagagagtctgatggctgattatgcataagaattgtccagatt 6223310  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 15069541 - 15069477
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtc 212  Q
    |||| |||||||||||||   ||||||||| ||| |||||| ||| |||||||||||||||||||    
T  15069541 aaagcaaaactcaaaactaatgaaatgtgacagagtctgattgcttattatacataagaattgtc 15069477  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 44572736 - 44572664
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||  | |||||| ||||||||||| | ||||||    
T  44572736 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatgtttgattatatataagaattgttcagattat 44572664  T

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Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 22426693 - 22426635
Alignment:
Q  30 aaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    ||||||||||| |||| ||||||||||| ||| || ||||||||| ||||||||||||||    
T  22426693 aaaaaccccta-aaattgctatgtttcaggaagactagaattacagactcaaatatagaa 22426635  T

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Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 7011783 - 7011817
Alignment:
Q  186 gatggctaattatacataagaattgtccggattat 220  Q
    ||||||| |||||||||||||||||||||||||||    
T  7011783 gatggctgattatacataagaattgtccggattat 7011817  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 18527677 - 18527616
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||   |||| ||||||||||  |||||| ||||||||| ||||||||||||||    
T  18527677 tcaaaaaccccctaaaattgctatgtttcgggaaaactagaattacagactcaaatatagaa 18527616  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 26611508 - 26611451
Alignment:
Q  32 aaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||  ||||| ||||| ||||| |||||| ||||||||| ||||||||||||||    
T  26611508 aaaccccatcaaattgctatatttcaggaaaactagaattacagactcaaatatagaa 26611451  T

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Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 38885747 - 38885817
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||   |||| |||||| ||  |||| || |||||||||||||||||||||||||||    
T  38885747 aaagcaaaactcaaaactgcttaaatatgagagttt--gatgactgattatacataagaattgtccggattat 38885817  T

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Target: scaffold0508 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 3014 - 2942
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  ||||||||||||| |||||||| | |||||||||| ||||||||||||||||    
T  3014 aaagcaaaactcaaaactgctgaaatgtgagagagtctgatggttgattatacataggaattgtccggattat 2942  T

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Target: scaffold0137 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 9125 - 9058
Alignment:
Q  153 aaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||||||   |||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  9125 aaaactcaaaactgttaaaatgtgagagagtctgatggctgattttacataagaattgtccggattat 9058  T

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Target: scaffold0770 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 4319 - 4391
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||| ||||||  ||||||||| ||||||||||||||||||| |||||||    
T  4319 aaagcaaaactcaaaactgctgaaatgcgagagagactgatggctgattatacataagaattgtctggattat 4391  T

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Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 102623 - 102695
Alignment:
Q  148 aaagtaaaactcaaaactggagaaatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    |||| ||||||||||||||  |||||| ||||||  ||||||||| ||||||||||||||||||| |||||||    
T  102623 aaagcaaaactcaaaactgctgaaatgcgagagagactgatggctgattatacataagaattgtctggattat 102695  T

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Target: scaffold0258 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 20432 - 20371
Alignment:
Q  28 tcaaaaacccctacaaatagctatgtttcaagaaaacaagaattacaaactcaaatatagaa 89  Q
    |||||||||||  ||||| |||||||||   |||||| ||||||||| ||||||||||||||    
T  20432 tcaaaaaccccctcaaattgctatgttttgggaaaactagaattacatactcaaatatagaa 20371  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 141026 - 141075
Alignment:
Q  171 aatgtgagagattctgatggctaattatacataagaattgtccggattat 220  Q
    ||||||||||| |||||||| | ||||||||  |||||||||||||||||    
T  141026 aatgtgagagagtctgatggttgattatacaccagaattgtccggattat 141075  T

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Target: scaffold0625 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 358 - 390
Alignment:
Q  1 cataaccaaaccacttctgtgttggtctcaaaa 33  Q
    |||||||||||||||||||||||||||| ||||    
T  358 cataaccaaaccacttctgtgttggtcttaaaa 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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