View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_38 (Length: 206)

Name: NF6378_low_38
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_38
NF6378_low_38
[»] chr5 (10 HSPs)
chr5 (87-183)||(39879760-39879856)
chr5 (87-183)||(38987651-38987747)
chr5 (87-183)||(39726364-39726460)
chr5 (88-183)||(40418230-40418325)
chr5 (91-181)||(39399809-39399899)
chr5 (88-183)||(3299480-3299578)
chr5 (88-183)||(3392373-3392471)
chr5 (88-181)||(39168793-39168886)
chr5 (88-183)||(1849912-1850010)
chr5 (88-183)||(1163729-1163824)
[»] chr4 (1 HSPs)
chr4 (88-183)||(25912334-25912429)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 39879760 - 39879856
Alignment:
Q  87 cgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879760 cgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 39879856  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 38987651 - 38987747
Alignment:
Q  87 cgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38987651 cgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgt 38987747  T

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Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 39726364 - 39726460
Alignment:
Q  87 cgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39726364 cgccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgt 39726460  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 40418230 - 40418325
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40418230 gccaaaaaatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 40418325  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 39399809 - 39399899
Alignment:
Q  91 aaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtc 181  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  39399809 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtc 39399899  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 3299480 - 3299578
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactgga---aataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||   |||||| |||||||||||||||||| ||||||||||||||||    
T  3299480 gccaaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgt 3299578  T

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Target: chr5; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 3392373 - 3392471
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactgga---aataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||   |||||| |||||||||||||||||| ||||||||||||||||    
T  3392373 gccaaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgt 3392471  T

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Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 39168793 - 39168886
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtc 181  Q
    |||||||||||||| ||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| ||||    
T  39168793 gccaaaaaatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtc 39168886  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 1849912 - 1850010
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactgga---aataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    ||||||||||||||||||||| ||||  | ||||||||||||||||||| ||||   |||||| ||||||||||||||||||||||||||||| |||||    
T  1849912 gccaaaaaatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgt 1850010  T

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Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 1163824 - 1163729
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatga-cacaacttttcaaatcaggactcatcttggtcgt 183  Q
    ||||||||||||||||||||| ||||  | ||||||||||| ||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  1163824 gccaaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcac-acttttcaaatcaggactcatcttggtcgt 1163729  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 25912429 - 25912334
Alignment:
Q  88 gccaaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 183  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25912429 gccaaaaaatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgt 25912334  T

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