View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_6 (Length: 485)
Name: NF6378_low_6
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_6 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 3e-77; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 267 - 475
Target Start/End: Complemental strand, 5380671 - 5380466
Alignment:
| Q |
267 |
ttgaaaattacctggagtttataactacaaagccagcaaaggcagcagcaccacgaagagcctctctccatttcggcgacttatctttcttcttcttctt |
366 |
Q |
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| T |
5380671 |
ttgaaaattacctggagtttagaactacaaatccagcaaaggcagcagccccatgaagagcctctctccatttcagcgtcttatctttcttcttcttc-- |
5380574 |
T |
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| Q |
367 |
cgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtacctcggagggatcaacatcatagaacactggtagcactatc |
466 |
Q |
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| T |
5380573 |
-gaaagtttgctcaagagactttcaaaagcttgtccaaactcaccagtttggtgacgtacctccaagggatcaacatcatagaacaccggtagcactatc |
5380475 |
T |
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| Q |
467 |
tgtcctatg |
475 |
Q |
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||| ||||| |
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| T |
5380474 |
tgtgctatg |
5380466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 5174359 - 5174244
Alignment:
| Q |
359 |
ttcttcttcgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtacctcggagggatcaacatcatagaacactggta |
458 |
Q |
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| T |
5174359 |
ttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatccgaaggatcaacatcatagaacaccggca |
5174260 |
T |
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| Q |
459 |
gcactatctgtcctat |
474 |
Q |
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| T |
5174259 |
acactatctgccctat |
5174244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 474
Target Start/End: Complemental strand, 5276105 - 5275990
Alignment:
| Q |
359 |
ttcttcttcgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtacctcggagggatcaacatcatagaacactggta |
458 |
Q |
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| T |
5276105 |
ttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggca |
5276006 |
T |
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| Q |
459 |
gcactatctgtcctat |
474 |
Q |
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| T |
5276005 |
acactatctgccctat |
5275990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 5692812 - 5692926
Alignment:
| Q |
360 |
tcttcttcgaaagtttgctcaagagactctcaaacgcttgtccaaactcaccagtttggtgacgtacctcggagggatcaacatcatagaacactggtag |
459 |
Q |
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| T |
5692812 |
tcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaa |
5692911 |
T |
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| Q |
460 |
cactatctgtcctat |
474 |
Q |
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| T |
5692912 |
cactatctgccctat |
5692926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 5107709 - 5107786
Alignment:
| Q |
400 |
tccaaactcaccagtttggtgacgtacctcggagggatcaacatcatagaacactggtagcactatctgtcctatgct |
477 |
Q |
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| T |
5107709 |
tccaaactcaccagtttgatgacgtacttctgagggatcaacatcatagaacaccggaagcaccacctgccctatgct |
5107786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 5429905 - 5429837
Alignment:
| Q |
272 |
aattacctggagtttataactacaaagccagcaaaggcagcagcaccacgaagagcctctctccatttc |
340 |
Q |
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| T |
5429905 |
aattacctggaatttaaaactacaaatccagcaaggtcagctgcctcacgaagtgcgtctctccatttc |
5429837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 11720 - 11821
Alignment:
| Q |
244 |
attttgatgtcatcacttaacatttgaaaattacctggagtttataactacaaagccagcaaaggcagcagcaccacgaagagcctctctccatttcggc |
343 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
11720 |
attttcatgtcatcacttaacatttgaaaattacctggagtttagaactacaaagc---------cagtagcaccacgaagagcctctctccatttcggc |
11810 |
T |
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| Q |
344 |
gacttatcttt |
354 |
Q |
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| T |
11811 |
gacttatcttt |
11821 |
T |
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