View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6378_low_7 (Length: 453)
Name: NF6378_low_7
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 33 - 441
Target Start/End: Original strand, 38851298 - 38851711
Alignment:
| Q |
33 |
agaaaagaagtcaaccttttcaactacgtggatgaagtaatataagacggccaactatgaaacatagaggaaatttccgcatagtgaagtaccaaaatca |
132 |
Q |
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| T |
38851298 |
agaaaagaagtcaaccttttcaactacgtggatgaagtaatataagacggccaactatgaaacatagaggaaatttccgcatagtgaagtaccaaaatca |
38851397 |
T |
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| Q |
133 |
gccccaacaacaacaaagaaattcgtaaaatgacattcatcacaagggtatttttgtctacaaaggaatgttagtggaagctactcgttattgtcattaa |
232 |
Q |
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| T |
38851398 |
gccccagcaacaacaaagaaattcgtaaaatgacattcatcacaagggtatttttgtctacaaaggaatgttagtggaagctactcgttattgtcattaa |
38851497 |
T |
|
| Q |
233 |
tttcatcttaatagtaatatt---nnnnnnncactcattccgcgtcatgattgttgttttcaaatttatagattgaaataatcaacacaacacgtttaat |
329 |
Q |
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| T |
38851498 |
tttcatcttaatagtaatattaaaaaaaaaacactcattccgcgtcatgattgttgttttcaaatttataaattgaaataatcaacacaacacgtttaat |
38851597 |
T |
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| Q |
330 |
taatcact--tatatatataaccccccaacttctccacttcccctcgttcttgttcacgttcacaaagatccattcaagaagaaagaaaatatggcagat |
427 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38851598 |
taatcacttatatatatataaccccccaacttctccacttcccctcgttcttgttcacgttcacaaagatccattcaagaagaaagaaaatatggcagat |
38851697 |
T |
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| Q |
428 |
gatgaaggttgtga |
441 |
Q |
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| T |
38851698 |
gatgaaggttgtga |
38851711 |
T |
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