View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6378_low_8 (Length: 431)
Name: NF6378_low_8
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6378_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 40923967 - 40923555
Alignment:
| Q |
1 |
ccaatgctagaagtgtcagacttggtcgtcaatggacccgtcattgcgtaatctggagcacagtagacatatgtgcccataactcttgttgaaacatgag |
100 |
Q |
| |
|
|||| |||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
40923967 |
ccaaggctataaatgtcagacttggacgtcaattgacccgtcattgcgtaatctggagcacagtagccatatgttcccataactcttgttgaaacatgag |
40923868 |
T |
|
| Q |
101 |
tcatatcaccgattggacctacttttgtcaagccaaaatcggataacttgggatgataatcatcgcctaa-aaaatgttggagcatttgaggtcacggta |
199 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40923867 |
tcatatcaccgattggacctacttttgccaagccaaaatcggataacttgggatgataatcatcgcctaacaaaatgttggagcatttgaggtcacggta |
40923768 |
T |
|
| Q |
200 |
tatgacaggaggcttcatttcatcatgcaaatactccaaacctttagctacaccagcagctattctcattcgtgtattccaatccaatggttttttcccg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40923767 |
tatgacaggaggcttcatttcatcatgcaaatactccaaacctttagctacaccagcagctattctcattcgtgtattccaatccaatggttttttcccg |
40923668 |
T |
|
| Q |
300 |
ggaggaagatctaacataacgaaaagacgaaaaacataagcaacaaaaacaaagaacacttgtgccaatttattctctacatgtttggattgaccccgag |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40923667 |
ggaggaagatctaacataaagaaaagacgaaaaacataagcaacaaaaacaaagaacacttgtgccaatttattctctgcatgtttggattgaccccgag |
40923568 |
T |
|
| Q |
400 |
tttaattggcaga |
412 |
Q |
| |
|
||||||||||||| |
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|
| T |
40923567 |
tttaattggcaga |
40923555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 40933829 - 40933416
Alignment:
| Q |
1 |
ccaatgctagaagtgtcagacttggtcgtcaatggacccgtcattgcgtaatctggagcacagtagacatatgtgcccataactcttgttgaaacatgag |
100 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||| |||| |||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
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|
| T |
40933829 |
ccaaagctataaatgtcagacttgaacgtcaattgacctgtcattccataatctggagcacagtagccatgtgttcccataactcttgttgaaacatgag |
40933730 |
T |
|
| Q |
101 |
tcatatcaccgattggacctacttttgtcaagccaaaatcggataacttgggatgataatcatcgcctaa-aaaatgttggagcatttgaggtcacggta |
199 |
Q |
| |
|
|| |||||| ||||| |||| ||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
40933729 |
tctgatcacccattgggcctatttttgccaagccaaaatcagataacttgggatgataatcattgcctaacaaaatgttggagcatttgaggtcacggta |
40933630 |
T |
|
| Q |
200 |
tatgacaggaggcttcatttcatcatgcaaatactccaaacctttagctacaccagcagctattctcattcgtgtattccaatccaatggttttttcccg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| |
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|
| T |
40933629 |
tatgacaggaggcttcatttcatcatgcaaatactccaaacctttagctacaccagcagctattctcattctggtattccagtccagtgggtttttccca |
40933530 |
T |
|
| Q |
300 |
ggaggaagatctaacataacgaa-aagacgaaaaacataagcaacaaaaacaaagaacacttgtgccaatttattctctacatgtttggattgaccccga |
398 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||| || |
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|
| T |
40933529 |
ggaggaagatctaacagaaagaagaagacgaaaaacaaaagcaacaaaaataaagaactcttacaccaatttattctctgcatgtttggattgaccctga |
40933430 |
T |
|
| Q |
399 |
gtttaattggcaga |
412 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40933429 |
ttttaattggcaga |
40933416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 40907464 - 40907074
Alignment:
| Q |
1 |
ccaatgctagaagtgtcagacttggtcgtcaatggacccgtcattgcgtaatctggagcacagtagacatatgtgcccataactcttgttgaaacatgag |
100 |
Q |
| |
|
|||| |||| || |||| |||||| |||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| | |
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|
| T |
40907464 |
ccaaagctataaatgtcggacttgaacgtcaactgacctgtcattgcgtaatctggagcacagtacccatatgttcccataactcttgtcgaaacatggg |
40907365 |
T |
|
| Q |
101 |
tcatatcaccgattggacctacttttgtcaagccaaaatcggataacttgggatgataatcatcgcctaa-aaaatgttggagcatttgaggtcacggta |
199 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||||||||| || ||||||| ||||||||| || ||||| |||||||| |||||||||||||| ||||| |
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|
| T |
40907364 |
tcttatcaccgattggacctacttttgccaggccaaaatcagacaacttggaatgataatcctcacctaacaaaatgttagagcatttgaggtcgcggta |
40907265 |
T |
|
| Q |
200 |
tatgacaggaggcttcatttcatcatgcaaatactccaaacctttagctacaccagcagctattctcattcgtgtattccaatccaatggttttttcccg |
299 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||| |||||| ||| |||||||||| |||||||| ||| |
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|
| T |
40907264 |
tataacaggaggcttcattttatcatgcaaatactccaaacccctggctgcaccagcagctattttcattcttgtgttccaatccagtggtttttgtccg |
40907165 |
T |
|
| Q |
300 |
ggaggaagatctaacataacga-aaagacgaaaaacataagcaacaaaaacaaagaacacttgtgccaatttattctctacatgtttggatt |
390 |
Q |
| |
|
|| | ||| ||| | | || || ||| |||||| ||||| | ||||||||||| |||| |||||||| ||||||| |||||||||||| |
|
|
| T |
40907164 |
ggcgaaaggtctgaaaaaatgatgtagaggaaaaagttaagcttc-aaaacaaagaatacttctgccaattcattctctgcatgtttggatt |
40907074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 40941437 - 40941158
Alignment:
| Q |
30 |
caatggacccgtcattgcgtaatctggagcacagtagacatatgtgcccataactcttgttgaaacatgagtcatatcaccgattggacctacttttgtc |
129 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||| || |||||| || |||||| ||||| |||| || || ||| ||| ||||| ||||||||| |
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|
| T |
40941437 |
caatggacccatcactgcgtaatccagagcaccatacccatatgagcacataacacttgtcgaaaaat---tcttattaccaattgggtctacttttgca |
40941341 |
T |
|
| Q |
130 |
aagccaaaatcggataacttgggatgataatcatcgcctaa-aaaatgttggagcatttgaggtcacggtatatgacaggaggcttcatttcatcatgca |
228 |
Q |
| |
|
||||||||||| | || ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
40941340 |
aagccaaaatcagttagcttgggatgataatcttcgcctaacaaaatggtggagcatttgaggtcacggtatatgacgggaggcttcatttcatcaagca |
40941241 |
T |
|
| Q |
229 |
aatactccaaacctttagctacaccagcagctattctcattcgtgtattccaatccaatggttttttcccgggaggaagatct |
311 |
Q |
| |
|
||| |||||||||| ||||||||||| |||||||| |||||| |||||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
40941240 |
aatgctccaaacctctagctacaccaacagctattttcattcttgtattccaatctagcggttttttcccgggggaaagatct |
40941158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 6603714 - 6603616
Alignment:
| Q |
58 |
gcacagtagacatatgtgcccataactcttgttgaaacatgagtcatatcaccgattggacctacttttgtcaagccaaaatcggataacttgggatga |
156 |
Q |
| |
|
||||| ||| ||||||| ||||| || | ||| || ||||||||| ||||||| | |||||| | ||||| || |||||||| ||||||||||||||| |
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|
| T |
6603714 |
gcacaatagccatatgttcccattacacgtgtggatacatgagtcttatcaccaactggaccaagttttgccagcccaaaatctgataacttgggatga |
6603616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 412
Target Start/End: Complemental strand, 55063787 - 55063401
Alignment:
| Q |
28 |
gtcaatggacccgtcattgcgtaatctggagcacagtagacatatgtgcccataactcttgttgaaacatgagtcatatcaccgattggacctacttttg |
127 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||| || |||| ||||| ||||||||||| ||||| ||| ||||||| ||||||||||||| | |
|
|
| T |
55063787 |
gtcaattgacctgtcattgcataatctggagcacagtacccaaatgttcccattactcttgttgagacatgggtcttatcacccgttggacctactttgg |
55063688 |
T |
|
| Q |
128 |
tcaagccaaaatcggataacttgggatgataatcatcgcctaa-aaaatgttggagcatttgaggtcacggtatatgacaggaggcttcatttcatcatg |
226 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
55063687 |
ccaagccgaaatcagataacttgggatgataatcatcgcctaacaaaatgttggagcatttgaggtcacgatatatgaccggaggcttcattttatcatg |
55063588 |
T |
|
| Q |
227 |
caaatactccaaacctttagctacaccagcagctattctcattcgtgtattccaatccaatggttttttcccgggaggaagatctaacataacgaa-aag |
325 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| |||||||| ||||||||| | |||||| ||| |
|
|
| T |
55063587 |
caaatactccaaacctttagctgcaccagcagctattttcattctcgtattccaatccagtggtttttccccgggagaaagatctaatagaacgaagaag |
55063488 |
T |
|
| Q |
326 |
acgaaaaacataagcaacaaaaacaaagaacacttgtgccaatttattctctacatgtttggattgaccccgagtttaattggcaga |
412 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
55063487 |
atgaaaaacataagcaacaaaaacaaagaatacttatgccaatttattctctgcatgtttggattgaccctgagattaattggcaga |
55063401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 49 - 310
Target Start/End: Complemental strand, 13172461 - 13172201
Alignment:
| Q |
49 |
taatctggagcacagtagacatatgtgcccataactcttgttgaaacatgagtcatatcaccgattggacctacttttgtcaagccaaaatcggataact |
148 |
Q |
| |
|
|||||| ||||||| || ||||||| ||||| || |||||||| ||||||||| ||||||| |||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
13172461 |
taatctagagcacaatacccatatgttcccattacccttgttgacacatgagtcttatcaccaattggacctacttttgccaagccgaaatcagataact |
13172362 |
T |
|
| Q |
149 |
tgggatgataatcatcgcctaa-aaaatgttggagcatttgaggtcacggtatatgacaggaggcttcatttcatcatgcaaatactccaaacctttagc |
247 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||| |||| | ||||||| |||||||||||| | |||||||||||| |
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|
| T |
13172361 |
tgggatgataatcgtctcctaacaaaatgttggagcatttgaggtcacgatatatgatagga-gtttcattttatcatgcaaataattcaaacctttagc |
13172263 |
T |
|
| Q |
248 |
tacaccagcagctattctcattcgtgtattccaatccaatggttttttcccgggaggaagatc |
310 |
Q |
| |
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| ||||| ||| ||||||||||| ||||||||||| | ||| ||||||||||||| |||||| |
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|
| T |
13172262 |
tgcaccaacagttattctcattctcgtattccaatctagtgg-tttttcccgggagaaagatc |
13172201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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