View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6378_low_9 (Length: 410)

Name: NF6378_low_9
Description: NF6378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6378_low_9
NF6378_low_9
[»] chr1 (3 HSPs)
chr1 (106-396)||(50436646-50436936)
chr1 (10-70)||(50436550-50436610)
chr1 (149-250)||(17910770-17910871)
[»] chr4 (2 HSPs)
chr4 (254-310)||(43131504-43131560)
chr4 (168-242)||(43131856-43131930)
[»] chr3 (2 HSPs)
chr3 (254-310)||(34288293-34288349)
chr3 (156-250)||(34287684-34287778)
[»] chr6 (2 HSPs)
chr6 (168-250)||(7592227-7592309)
chr6 (254-310)||(7593257-7593313)
[»] chr7 (1 HSPs)
chr7 (143-232)||(41364008-41364097)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 106 - 396
Target Start/End: Original strand, 50436646 - 50436936
Alignment:
Q  106 gacgaacctctttagcatttgcatcggaaggagctgtgtaacggttaccctgactgttaatagtaggattagcactacctccgatagcatacatttccca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50436646 gacgaacctctttagcatttgcatcggaaggagctgtgtaacggttaccctgactgttaatagtaggattagcactacctccgatagcatacatttccca 50436745  T
Q  206 ctgtgtaaaatcattgttaacaacatgaatataaccaagtctacaacgtggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttact 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50436746 ctgtgtaaaatcattgttaacaacatgaatataaccaagtctacaacgtggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttact 50436845  T
Q  306 tgcattcctctatctggagtgtatttatcattatgacctaaaagcataacttcatcgtgatgaccaaaatgattattcgaaattgttattg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50436846 tgcattcctctatctggagtgtatttatcattatgacctaaaagcataacttcatcgtgatgaccaaaatgattattcgaaattgttattg 50436936  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 50436550 - 50436610
Alignment:
Q  10 catcatcagcatctcatctgcacgcgccaccattgcgagtacaaaagcatatattggttcc 70  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50436550 catcattagaatctcatctgcacgcgacaccattgcgagtacaaaagcatatattggttcc 50436610  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 17910871 - 17910770
Alignment:
Q  149 gttaccctgactgttaatagtaggattagcactacctccgatagcatacatttcccactgtgtaaaatcattgttaacaacatgaatataaccaagtcta 248  Q
    ||||||||| ||||| || || || | |||||| || || ||||||||||||||||| || ||| | |||||||| || ||||| | ||||||| |||||    
T  17910871 gttaccctggctgttgattgtggggtcagcacttccaccaatagcatacatttcccagtgagtatagtcattgttcaccacatggaaataaccatgtcta 17910772  T
Q  249 ca 250  Q
    ||    
T  17910771 ca 17910770  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 43131560 - 43131504
Alignment:
Q  254 tggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttacttgcat 310  Q
    |||||||||||||||||| |||||||||||||||||||| || || || ||||||||    
T  43131560 tggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcat 43131504  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 43131930 - 43131856
Alignment:
Q  168 gtaggattagcactacctccgatagcatacatttcccactgtgtaaaatcattgttaacaacatgaatataacca 242  Q
    ||||| |||||||| || || ||||||||||||||||| || ||| | |||||||| || ||||||| |||||||    
T  43131930 gtagggttagcacttcccccaatagcatacatttcccagtgagtatagtcattgtttaccacatgaaaataacca 43131856  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 34288293 - 34288349
Alignment:
Q  254 tggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttacttgcat 310  Q
    ||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||    
T  34288293 tggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcat 34288349  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 34287684 - 34287778
Alignment:
Q  156 tgactgttaatagtaggattagcactacctccgatagcatacatttcccactgtgtaaaatcattgttaacaacatgaatataaccaagtctaca 250  Q
    ||||||||||| || ||||| ||||| ||||| ||||||||||||||||| || ||  | |||||||| || ||||| | ||| ||||| |||||    
T  34287684 tgactgttaatggttggatttgcacttcctccaatagcatacatttcccagtgagtgtagtcattgttcaccacatggaaatatccaagcctaca 34287778  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 7592227 - 7592309
Alignment:
Q  168 gtaggattagcactacctccgatagcatacatttcccactgtgtaaaatcattgttaacaacatgaatataaccaagtctaca 250  Q
    ||||| |||||||| ||||| || |||||||||||||| |||||  |||||||||| || ||||||| ||| ||| |||||||    
T  7592227 gtagggttagcactccctccaattgcatacatttcccaatgtgtgtaatcattgttcaccacatgaaaatagccatgtctaca 7592309  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 7593257 - 7593313
Alignment:
Q  254 tggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttacttgcat 310  Q
    |||||||||||| ||||| ||||||||||| |||||||| || || || ||||||||    
T  7593257 tggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcat 7593313  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 41364008 - 41364097
Alignment:
Q  143 gtaacggttaccctgactgttaatagtaggattagcactacctccgatagcatacatttcccactgtgtaaaatcattgttaacaacatg 232  Q
    ||||||||| || |||||||||||||| || | | |||| || || || ||||||||||||||||  || ||||||||||| || |||||    
T  41364008 gtaacggttcccttgactgttaatagttggttcaccactccccccaatggcatacatttcccactcagtgaaatcattgttgaccacatg 41364097  T

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