View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_high_10 (Length: 459)
Name: NF6379_high_10
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 7980525 - 7980095
Alignment:
| Q |
13 |
aatatcgtgtttttaaaagcaaatttatttaagggtataactgaaataatgaagagtccaacccnnnnnnnnnnnnnnnnnntcatatattccctttata |
112 |
Q |
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| T |
7980525 |
aatatcgcgtttttaaaagcaaatttatttaagggtataattgaaataatgaagagtccaacccaaaaaaaaaaa-------tcatatattccctttata |
7980433 |
T |
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| Q |
113 |
taatgtaactagggtctttggctctcaaatggatttagatcccctctaaaatacc-ttctcacccnnnnnnnntcaaaagatttcaaacttttttatatt |
211 |
Q |
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| T |
7980432 |
taatgtaactagggtctttggctctccaatggatttaaatcccctctaaaatacccttctcacccaaaaaaa-tcaaaagatttcaaacttttttatatt |
7980334 |
T |
|
| Q |
212 |
tcttaagctaatgtgaa-ttagttagccaatttttgtcctatcctttttactagcacctagcttcttattgttatgatcatacatacatacata----ta |
306 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
7980333 |
tcttaagcgaatgtgaaattagttagccaatttttgtcctatcctttttactagcacctagcttctttttgttatgatcatacatacatacatacatata |
7980234 |
T |
|
| Q |
307 |
tatgaggatatagattggttttatatgtatagcttaaattaattggatgttcatttaattttgtgttattaaacagactgaagaaaaatcagaaagggac |
406 |
Q |
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| T |
7980233 |
tatgaggatatagattgattttatatgtatagcttaaattaattggatgttcatttaattttgtgttattaaacagattgaagaaaaatcagaaagggac |
7980134 |
T |
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| Q |
407 |
aagagaattgatgagtggcttccaattacatctaaaagg |
445 |
Q |
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| T |
7980133 |
aagagaattgatgagtggcttccaattacatctaaaagg |
7980095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 6040687 - 6040644
Alignment:
| Q |
22 |
tttttaaaagcaaatttatttaagggtataactgaaataatgaa |
65 |
Q |
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| T |
6040687 |
tttttaaaaacaaatttgtttaagggtataacttaaataatgaa |
6040644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 38767365 - 38767323
Alignment:
| Q |
23 |
ttttaaaagcaaatttatttaagggtataactgaaataatgaa |
65 |
Q |
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| T |
38767365 |
ttttaaaagcaaatttatttaagggtacaactgaaataatgaa |
38767323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 33144212 - 33144244
Alignment:
| Q |
22 |
tttttaaaagcaaatttatttaagggtataact |
54 |
Q |
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| T |
33144212 |
tttttaaaagcaaatttatttaaaggtataact |
33144244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 40155069 - 40155112
Alignment:
| Q |
22 |
tttttaaaagcaaatttatttaagggtataactgaaataatgaa |
65 |
Q |
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| T |
40155069 |
tttttaaaagcaaatttatttaagggtataactagaataatgaa |
40155112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 45418341 - 45418384
Alignment:
| Q |
22 |
tttttaaaagcaaatttatttaagggtataactgaaataatgaa |
65 |
Q |
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| T |
45418341 |
tttttaaaaacaaatttatttaagggtataactggaataatgaa |
45418384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 37716145 - 37716189
Alignment:
| Q |
26 |
taaaagcaaatttatttaagggtataactgaaataatgaagagtc |
70 |
Q |
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| T |
37716145 |
taaaaccaaatttatttaagggtataactggaataatgaaaagtc |
37716189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 19840346 - 19840310
Alignment:
| Q |
25 |
ttaaaagcaaatttatttaagggtataactgaaataa |
61 |
Q |
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| T |
19840346 |
ttaaaagcaagtttatttaagggtataactaaaataa |
19840310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 51940405 - 51940361
Alignment:
| Q |
32 |
caaatttatttaagggtataactgaaataatgaagagtccaaccc |
76 |
Q |
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||||||||||||||||||||| || ||||||||| | |||||||| |
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| T |
51940405 |
caaatttatttaagggtataattggaataatgaaaaatccaaccc |
51940361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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