View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_high_16 (Length: 346)
Name: NF6379_high_16
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 29106148 - 29106349
Alignment:
| Q |
14 |
atcatcattaatgtaaacataatcaacaacaaaacctcataaaggttatttacattaatcaatctaatctaaatctaaaacctgttaattgaaaaagcag |
113 |
Q |
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| T |
29106148 |
atcatcattaatgtaaacataatcaacaacaaaacctcataaaggttatttacattaatcaatctaatctaaatctaaaacctgttaattgaaaaagcag |
29106247 |
T |
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| Q |
114 |
attaagtaagtaaccaacccctcaaaaattagcaatctccttcctcttgcaatattttctttcattccaaaatcatacttcataaacagagattaacctt |
213 |
Q |
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| T |
29106248 |
attaagtaagtaaccaacccctcaaaaattagcaatctccttcctcttgcaatattttttttcattccaaaatcatacttcatgaacagagattaacctt |
29106347 |
T |
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| Q |
214 |
aa |
215 |
Q |
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|| |
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| T |
29106348 |
aa |
29106349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 29106390 - 29106476
Alignment:
| Q |
252 |
catcctaattaagaattaagtgttaccaaacactgtctaagtgtgtttatgttgttgatgatgtttaacactgtattgatgatgatg |
338 |
Q |
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| T |
29106390 |
catcctaattaagaattaagtgttaccaaacactggctaagtgtgtttatgttgttgatgatgtttaacactgtattgatgatgatg |
29106476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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