View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6379_high_19 (Length: 335)

Name: NF6379_high_19
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6379_high_19
NF6379_high_19
[»] chr2 (1 HSPs)
chr2 (1-325)||(41830631-41830955)
[»] chr4 (2 HSPs)
chr4 (100-198)||(24358388-24358486)
chr4 (108-168)||(43560213-43560273)
[»] chr8 (1 HSPs)
chr8 (125-182)||(5948210-5948267)
[»] chr1 (4 HSPs)
chr1 (98-164)||(38720042-38720108)
chr1 (101-169)||(37963057-37963125)
chr1 (108-170)||(51044672-51044734)
chr1 (112-156)||(16127080-16127124)
[»] chr3 (1 HSPs)
chr3 (108-170)||(34626446-34626508)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 41830955 - 41830631
Alignment:
Q  1 attagcttacatgcaaagtattannnnnnnatgtttcaaattaattaagttcttctataatatgcattgacctgacatttgaatacatttgactttttga 100  Q
    ||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830955 attagcttacatgcaaagtattcttttgttatgtttcaaattaattaacttcttctataatatgcattgacctgacatttgaatacatttgactttttga 41830856  T
Q  101 agatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtctt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830855 agatggtctcaaatagcagcacgattaccgggaagaaccgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtctt 41830756  T
Q  201 cttcaacctcaccaaatccaagtgatgagtcctcacctgaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830755 cttcaacctcaccaaatccaagtgatgagtcctcacctgaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaatta 41830656  T
Q  301 caacaactacatgagtatgcctatg 325  Q
    ||||| |||||||||||||||||||    
T  41830655 caacagctacatgagtatgcctatg 41830631  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 24358486 - 24358388
Alignment:
Q  100 aagatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaagacttaagaacttgtc 198  Q
    ||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| |||||| ||||    
T  24358486 aagatggtctcaaattgcggcacgcttacccggaagaacagacaatgaaatcaagaacttttggaattcaacaataaagaaaagactcaagaacatgtc 24358388  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 43560273 - 43560213
Alignment:
Q  108 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattc 168  Q
    ||||||||||||||| |||||| || ||||| || |||||||| |||||||| ||||||||    
T  43560273 ctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattc 43560213  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 5948267 - 5948210
Alignment:
Q  125 ttaccgggaagaactgacaatgaaataaaaaacttttggaattcaactataaagaaaa 182  Q
    ||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||    
T  5948267 ttacctggaagaacagataatgagataaaaaacttttggaattcaaccataaagaaaa 5948210  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 38720042 - 38720108
Alignment:
Q  98 tgaagatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttgga 164  Q
    ||||| |||||| ||||||| | || ||||||||||||||| |||||||||||||| |||| |||||    
T  38720042 tgaaggtggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 37963057 - 37963125
Alignment:
Q  101 agatggtctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattca 169  Q
    ||||||||||| || ||||||| |||||| ||||||||||||||||| || |||||  | |||||||||    
T  37963057 agatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattca 37963125  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 51044672 - 51044734
Alignment:
Q  108 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaa 170  Q
    ||||||| ||| ||| |||||| || ||||| || ||||| ||||||||||||||||||||||    
T  51044672 ctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaa 51044734  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 16127124 - 16127080
Alignment:
Q  112 aatagcagcacgattaccgggaagaactgacaatgaaataaaaaa 156  Q
    ||||||||||  |||||| |||||||| |||||||||||||||||    
T  16127124 aatagcagcaaaattacctggaagaacagacaatgaaataaaaaa 16127080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 34626508 - 34626446
Alignment:
Q  108 ctcaaatagcagcacgattaccgggaagaactgacaatgaaataaaaaacttttggaattcaa 170  Q
    ||||||| ||||||| |||||| || ||||| || ||||| || |||||||||||||||||||    
T  34626508 ctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaa 34626446  T

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