View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6379_high_2 (Length: 632)
Name: NF6379_high_2
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_2 |
 | |
|
| [»] scaffold0065 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 19)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 14 - 625
Target Start/End: Complemental strand, 3142985 - 3142371
Alignment:
| Q |
14 |
ctcccttcctgttattcattgccactc--aaacttttttcaatcttcaatttgtttaatttgtagtattttctttttgaaggatggctgaacaaattcca |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3142985 |
ctcccttcctgttattcattgccactctcaaacttttttcaatcttcaatttgtttaatttgtagtattttctttttgaaggatggctgaacaaattcct |
3142886 |
T |
|
| Q |
112 |
tatgctgttgctgcaagcctcgttaacaggttacttacttcattttc-atccttttctctattttttcccttgaattgtttcattcacaatatatgttat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3142885 |
tatgctgttgctgcaagcctcgttaacaggttacttacttcattttccaaccttttctctattttttcccttgaattgtttcattcacaatatatgttat |
3142786 |
T |
|
| Q |
211 |
aattacagttagttgatatatatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3142785 |
aattacagttagttgatatatatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaa |
3142686 |
T |
|
| Q |
311 |
ctggaaaggcttaaaaacacagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3142685 |
ctggaaaggcttaaaaacacagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaa |
3142586 |
T |
|
| Q |
411 |
gactcaaagatgatgtacttcatcctgctgatgacttgctagatgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3142585 |
gactcaaagatgatgtacttcatcctgctgatgacttgctagatgaatttgctatcgaagacatgagacaaaaacgggatgaagctcgtaagaacaaagt |
3142486 |
T |
|
| Q |
511 |
aacacaggtgcttcattctttatctccgaatagaattgcttttagccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3142485 |
aacacaggtgcttcattctttatctccgaatagaattgcttttagccgtaaaatggcttatgaggttgaaaagatacaaaagaagtttaatgatgtggtg |
3142386 |
T |
|
| Q |
611 |
aaagatatgtctgtg |
625 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3142385 |
aaagatatgtctgtg |
3142371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 253 - 625
Target Start/End: Complemental strand, 2711860 - 2711491
Alignment:
| Q |
253 |
caggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtg |
352 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |||||| || || |||||||||||||||||||||||||| |
|
|
| T |
2711860 |
caggttggcttctgcggcctttcgtgaacttggacggatttatggtgttatggatgaattggaaatactcaagaacacagttgaatccatcaaagctgtc |
2711761 |
T |
|
| Q |
353 |
ctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctag |
452 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||| |||||| ||||| |||| |||||||||||| ||| ||| |
|
|
| T |
2711760 |
ctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaa---gatgtgcttcttcctgctgatgatttgatag |
2711664 |
T |
|
| Q |
453 |
atgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctttatctccgaatagaattgcttt |
552 |
Q |
| |
|
|||| ||| ||| ||||| |||| ||| ||| ||||| |||||| ||| |||||||| || ||||| ||||||| ||||| | ||| |||||| |
|
|
| T |
2711663 |
atgagtttcttattgaagatatgatacataaaagggataaagctcataacaacaaagtgactcaggtatttcattccttatccataagcagagctgcttt |
2711564 |
T |
|
| Q |
553 |
tagccgtaaaatggcttatgagattgaaaaaatacaaaagaagt-ttaatgatgtggtgaaagatatgtctgtg |
625 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |
|
|
| T |
2711563 |
tcgccgtaaaatggctcatgagattgaaaaaatacaaaa-aagtgttaatgatgttgtgaaagatatgtctgtg |
2711491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 254 - 622
Target Start/End: Original strand, 2988880 - 2989245
Alignment:
| Q |
254 |
aggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgc |
353 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||| | ||||| |||||||||||| ||||| ||||| |||||| | |
|
|
| T |
2988880 |
aggttggcttctgcagcctttcgtgaatttggacgaatttatggtgtcatggatgaattagaaagacttaaaaacacaattgaagtcatcagagctgtac |
2988979 |
T |
|
| Q |
354 |
tccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctaga |
453 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||| ||||| ||||||| |||||| || || |||| |||||| ||||| ||| |||| |
|
|
| T |
2988980 |
tccttgatgctgaggagaaacaagagaaaagtcctgctgtacaagtctgggtaagaaggctcaaa---gacgtgcttcttcctgcagatgatttgataga |
2989076 |
T |
|
| Q |
454 |
tgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctttatctccgaatagaattgctttt |
553 |
Q |
| |
|
||| ||| ||| ||||| |||| ||||||||||||| |||||| |||||||||||| |||||||| ||||||| || | || | |||| ||||||| |
|
|
| T |
2989077 |
tgagtttcttattgaagatatgatacacaaacgggataaagctcataagaacaaagtgacacaggtaattcattccttcttaccaagcagaactgctttt |
2989176 |
T |
|
| Q |
554 |
agccgtaaaatggcttatgagattgaaaaaatacaaaagaag-tttaatgatgtggtgaaagatatgtct |
622 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||||| ||||| | | ||||||||||| |
|
|
| T |
2989177 |
cgccgtaaaatggctcatgagattgaaaaaatac-aaagaagttttaaagatgttgaggaagatatgtct |
2989245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 3161939 - 3161761
Alignment:
| Q |
14 |
ctcccttcctgttattcattgccactc--aaacttttttcaatcttcaatttgtttaatttgtagtattttctttttgaaggatggctgaacaaattcca |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3161939 |
ctcccttcctgttattcattgccactctcaaacttttttcaatcttcaatttgtttaatttgtagtattttctttttgaaggatggctgaacaaattcct |
3161840 |
T |
|
| Q |
112 |
tatgctgttgctgcaagcctcgttaacaggttacttacttcatttt-catccttttctctattttttcccttgaattgtt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||| |
|
|
| T |
3161839 |
tatgctgttgctgcaagcctcgttaacaggttacttacttcattttccaaccttttctcta-tttttcccttaaattgtt |
3161761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 269 - 623
Target Start/End: Complemental strand, 9851661 - 9851307
Alignment:
| Q |
269 |
gcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgctccttgatgctgaag |
368 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||| ||||| |||||| |||||| ||||| |||||||| || | || |||||||||||||||||||| |
|
|
| T |
9851661 |
gccttgcgtgaatttggacggatcaatggtgttatgaatgaattggaaaagcttaagaacacggttgaatctattagagttgtgctccttgatgctgaag |
9851562 |
T |
|
| Q |
369 |
acaaacaagaga---aaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctagatgaatttgctat |
465 |
Q |
| |
|
| |||||||| ||| ||||||||| | || ||| ||||||| |||||||||| | ||||||||||| ||||| |||||||||||||||| ||| |
|
|
| T |
9851561 |
agaaacaagaagcacaaaatcatgctgttcgaaattgggtaagaaggctcaaagatg---tgcttcatcctgcagatgatttgctagatgaatttgttat |
9851465 |
T |
|
| Q |
466 |
cgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctttatctccgaatagaattgcttttagccgtaaaatg |
565 |
Q |
| |
|
||||| ||||| ||||| ||||||| ||| |||||||||||||||| |||| |||||||| |||||||| || | |||| ||||| ||||||||||| |
|
|
| T |
9851464 |
tgaagatatgaggaacaaaatggatgaaactcataagaacaaagtaacaaaggtacttcattccttatctccaaacaaaatttcttttcgccgtaaaatg |
9851365 |
T |
|
| Q |
566 |
gcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtgaaagatatgtctg |
623 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
9851364 |
gcatatgagattgaaaaaatacaaaaaggttttaatgatgtagtaaaagatatgtctg |
9851307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 243 - 586
Target Start/End: Complemental strand, 2916715 - 2916375
Alignment:
| Q |
243 |
tttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccat |
342 |
Q |
| |
|
|||||||| ||| |||||||| | ||||| |||||||||| ||||||| |||||||| | | |||| | || |||||| | || ||||||||||| |
|
|
| T |
2916715 |
tttctttttacagcttggcttctgaggcctgtcgtgaatttcgacggatatatggtgttaagtatgaggtcgataggcttcgggagacggttgaatccat |
2916616 |
T |
|
| Q |
343 |
caaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgat |
442 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||| ||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
2916615 |
caaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactca---atgatgtgcttcatcctgctgat |
2916519 |
T |
|
| Q |
443 |
gacttgctagatgaatttgctatcgaagacatgagacacaaacgggatg-aagctcgt---aagaacaaagtaacacaggtgcttcattctttatctccg |
538 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||| |||||| | ||| |||| ||| ||||||||||| || |||| | ||||| |||||||| |
|
|
| T |
2916518 |
gacttgctagatgaatttgttattgaaggcatgcgacaca----gaatgaaagcacgtaagaagaacaaagtgtcaaaggtattgcattccttatctcca |
2916423 |
T |
|
| Q |
539 |
aatagaattgcttttagccgtaaaatggcttatgagattgaaaaaata |
586 |
Q |
| |
|
|| | |||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
2916422 |
aaaaaaattgcttttcgccgtaaaatggctcgagagattgaaaaaata |
2916375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 233 - 379
Target Start/End: Original strand, 3001875 - 3002021
Alignment:
| Q |
233 |
tgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacag |
332 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| || |||||| |||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
3001875 |
tgctgaaaattttgttttcgtaggttggcttctgcagcctttgatgaatttggaaggattaatggtgttatggatgaattggaaaggcttaagaacacag |
3001974 |
T |
|
| Q |
333 |
ttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagag |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3001975 |
ttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagag |
3002021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 247 - 484
Target Start/End: Complemental strand, 2911711 - 2911477
Alignment:
| Q |
247 |
ttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaa |
346 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| |||||| | || |||||||| ||| |||| ||||||||||||| || |||||||| || |||| | |
|
|
| T |
2911711 |
ttttgacaggttggcatctgcggcctttcgtgagtttggaggaatctatggtgttatgaatgagttggaaaggcttaagaatacagttgagtctatcaga |
2911612 |
T |
|
| Q |
347 |
gctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgact |
446 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||| ||||||||| ||| |||||| |||||||||||| ||||| || || |||||| ||| |
|
|
| T |
2911611 |
aatgtactccttgatgctgaggacaaacaagaacaaaaccatgctgtaaaaaactggattagaagactcaaa---gatgtgctgaattttgctgacaact |
2911515 |
T |
|
| Q |
447 |
tgctagatgaatttgctatcgaagacatgagacacaaa |
484 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
2911514 |
tgctagatgaatttgttattgaagatttgagacacaaa |
2911477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 254 - 397
Target Start/End: Original strand, 2979968 - 2980111
Alignment:
| Q |
254 |
aggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgc |
353 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||||||| || ||||||||||||| | ||||| |||||||||||| ||||| ||||| |||||| | |
|
|
| T |
2979968 |
aggttggcttctgttgccttacgcgaatttggacggattaataatgtgatggatgaattagaaagacttaaaaacacaattgaagtcatcagagctgtac |
2980067 |
T |
|
| Q |
354 |
tccttgatgctgaagacaaacaagagaaaagtcatgctgtacaa |
397 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2980068 |
tccttgatgctgaggagaaacaagagaaaagtcatgctgtacaa |
2980111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 623
Target Start/End: Original strand, 3002034 - 3002229
Alignment:
| Q |
428 |
cttcatcctgctgatgacttgctagatgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcatt |
527 |
Q |
| |
|
|||| |||||||| ||| ||| ||||||| ||| ||| ||||| |||| ||||||| ||||| ||||| |||||||||||| |||||||| |||||| |
|
|
| T |
3002034 |
cttcttcctgctgttgatttgatagatgagtttcttattgaagatatgatacacaaaagggataaagctgataagaacaaagtgacacaggtatttcatt |
3002133 |
T |
|
| Q |
528 |
ctttatctccgaatagaattgcttttagccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtgaaagatatgtctg |
623 |
Q |
| |
|
| || |||| | ||| ||||||| ||| |||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
3002134 |
ccttctctctaagcagagctgctttttgccataaaatggctcttgagattgaaaaaatacaaaaaagttttaatgatgttgtgaaagatatgtctg |
3002229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 504 - 619
Target Start/End: Complemental strand, 3170596 - 3170481
Alignment:
| Q |
504 |
acaaagtaacacaggtgcttcattctttatctccgaatagaattgcttttagccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatga |
603 |
Q |
| |
|
||||||| | |||||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||||||| |
|
|
| T |
3170596 |
acaaagtgaaacaggtacttcatcgcttatctccaaatagaattgcttttagccgtaaaatggctcatgagattgaaaaattacaaaccaaatttaatga |
3170497 |
T |
|
| Q |
604 |
tgtggtgaaagatatg |
619 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3170496 |
cgtggtgaaagatatg |
3170481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 13790631 - 13790691
Alignment:
| Q |
82 |
tctttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
13790631 |
tctttttgaaggatggctgagcaaattccatatgctgttgctgaaagcctctttaacaggt |
13790691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 2988709 - 2988769
Alignment:
| Q |
82 |
tctttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||| |
|
|
| T |
2988709 |
tctttttgaaggatggctgaacaaattccatacggtgttgctacaagtctcgttaacaggt |
2988769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 3174109 - 3174051
Alignment:
| Q |
84 |
tttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
3174109 |
tttttgaagaatggctgagcaaattccatatgctgttgctgcaagtctcattaacaggt |
3174051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 2978918 - 2978983
Alignment:
| Q |
82 |
tctttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggttactt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| |||| |
|
|
| T |
2978918 |
tctttttgaaggatggctgaacaaattccatacagtgttgctacaagtctcgttaacaggtgactt |
2978983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 3283243 - 3283187
Alignment:
| Q |
86 |
tttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
3283243 |
tttgaaggatggccgagcaaattccatacgctgttgctgaaagcctctttaacaggt |
3283187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 2712008 - 2711954
Alignment:
| Q |
88 |
tgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||| |||| ||| ||||||||| |
|
|
| T |
2712008 |
tgaagcatggctgaacaaattccatacggtgttgctacaagtctctttaacaggt |
2711954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 2917025 - 2916992
Alignment:
| Q |
82 |
tctttttgaaggatggctgaacaaattccatatg |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
2917025 |
tctttttgaaggatggttgaacaaattccatatg |
2916992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 2912072 - 2912012
Alignment:
| Q |
82 |
tctttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
||||||| |||||||||||| | ||||||||||| | |||||| ||||||| |||| |||| |
|
|
| T |
2912072 |
tctttttaaaggatggctgagctaattccatatggtcttgctgaaagcctcattaaaaggt |
2912012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 231 - 623
Target Start/End: Original strand, 44971 - 45362
Alignment:
| Q |
231 |
tatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacac |
330 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||| || || |||| ||| |||||||||||| ||||||| ||| |||| ||||||||||||| || || |
|
|
| T |
44971 |
tatgctgaatattttcttttg-caggttggcttctgcagcttttcatgagtttggacggattcatggtgttatgcatgagttggaaaggcttaagaatac |
45069 |
T |
|
| Q |
331 |
agttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtactt |
430 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||| || |||||| | ||||||||| ||| |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
45070 |
tgttgaatccgtcagagctgtgctccttgatgctgaggagaaacaacaacaaagtcatggtgtgcaaaactggataagaagactcaaagatgatgtgctt |
45169 |
T |
|
| Q |
431 |
catcctgctgatgacttgctagatgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctt |
530 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | |
|
|
| T |
45170 |
catcctgctgatgatttgctagatgaattttctattgaagacatgagacacaaacgggatgaagctcgcaagaacaaagtgacacaggtacttcatcgct |
45269 |
T |
|
| Q |
531 |
tatctccgaatagaattgcttttagccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtgaaagatatgtctg |
623 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
45270 |
tatctccaaatagaattgcttttagccgtaaaatggctcatgagattgaaaaaatacaaacaaaatttaatgacgtggtgaaagatatgtctg |
45362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 230 - 623
Target Start/End: Original strand, 50138 - 50530
Alignment:
| Q |
230 |
atatgctggaaattttcttttgtcaggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaaca |
329 |
Q |
| |
|
|||||||| | ||||||||||| | |||||||||| || || ||||||||||||||||||||| ||||||| ||| | | || |||||||||| || | |
|
|
| T |
50138 |
atatgctgaatattttcttttgaccggttggcttctgctgcttttcgtgaatttggacggattcatggtgttatgcacaagttgaaaaggcttaagaata |
50237 |
T |
|
| Q |
330 |
cagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtact |
429 |
Q |
| |
|
| ||||||||| || |||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50238 |
ctgttgaatccgtctgagctgtgctcctcgatgctgaagagaaacaagagcaaagtaatgctgtacaaatctggataagaagactcaaagatgatgtact |
50337 |
T |
|
| Q |
430 |
tcatcctgctgatgacttgctagatgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattct |
529 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||| ||||||||||||||||| ||| | | |||||| ||||||||| |
|
|
| T |
50338 |
tcatcctgctgatgacttgctagataaatttcttattgaagatttgagacacaaacgagatgaagctcgtaagaaaaaactgagacaggtacttcattct |
50437 |
T |
|
| Q |
530 |
ttatctccgaatagaattgcttttagccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtgaaagatatgtctg |
623 |
Q |
| |
|
|||||||| || |||||||||||| ||| |||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
50438 |
ttatctccaaacagaattgcttttcgccttaaaatggctcatgagattgaaaaaatacaaaa-aaatttaatgatgtggtgaaagatatgtctg |
50530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 44856 - 44915
Alignment:
| Q |
85 |
ttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggtta |
144 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
44856 |
ttttgaagaatggctgaacaaatcccatatgctgttgctgctagcctcattaacaggtta |
44915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 50003 - 50066
Alignment:
| Q |
85 |
ttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggttactta |
148 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
50003 |
ttttgaaagatggctaaacaaatcccatatgctgttgctgctagcctcattaacaggttactta |
50066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 253 - 623
Target Start/End: Complemental strand, 3919729 - 3919359
Alignment:
| Q |
253 |
caggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtg |
352 |
Q |
| |
|
|||||||||||| || || |||||||||||||| |||||||||||||| ||| || | ||||||||||||| | |||||| ||||||||| ||||||| |
|
|
| T |
3919729 |
caggttggcttctgcagcgtttcgtgaatttgggcggatttatggtgttatgcatcagttggaaaggcttaagagtacagttcaatccatcagagctgtg |
3919630 |
T |
|
| Q |
353 |
ctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctag |
452 |
Q |
| |
|
||||||||||| || || |||||| | ||| ||||| ||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
3919629 |
ctccttgatgccgaggagaaacaacaacaaaatcatggtgtgcaaaactggataagaaggctcaaagatgatgtgcttcatcctgctgatgacttgctcg |
3919530 |
T |
|
| Q |
453 |
atgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctttatctccgaatagaattgcttt |
552 |
Q |
| |
|
||||||||| ||| | || |||||||||||| || |||||| |||||||||||||||| |||| |||||||| |||||||| || ||| ||||||| |
|
|
| T |
3919529 |
atgaatttgttattcacgatatgagacacaaaattgaggaagctgataagaacaaagtaacaaaggtacttcattccttatctccaaacagatttgcttt |
3919430 |
T |
|
| Q |
553 |
tagccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtgaaagatatgtctg |
623 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
3919429 |
tcgccgtaaaatggctcatgagattgaaaaactacaaacaaaatttaatgatgtggtgaatgatatgtctg |
3919359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 254 - 622
Target Start/End: Original strand, 18355277 - 18355642
Alignment:
| Q |
254 |
aggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgc |
353 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
18355277 |
aggttggcttctgcagcctttcgtgaaattggacgaatttatggtgtcatggatgaactggaaaggcttaagaagacagttgaatccatcaaagctgtgc |
18355376 |
T |
|
| Q |
354 |
tccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctaga |
453 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| |||| | || | |||| |||||| ||||| ||| |||| |
|
|
| T |
18355377 |
tccttgatgctgaagacaaacaagagcaaagtcatgctgtacaactctgggttagaaggctca---acgacctgcttcttcctgcagatgatttgataga |
18355473 |
T |
|
| Q |
454 |
tgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctttatctccgaatagaattgctttt |
553 |
Q |
| |
|
||||||| ||| ||||| |||| ||||||| ||||| |||||| |||||||||||| | |||||| ||||||| || || || | |||| ||||||| |
|
|
| T |
18355474 |
tgaattttttattgaagatatgatacacaaaagggataaagctcataagaacaaagtgaaacaggtatttcattccttctcaccaagcagaactgctttt |
18355573 |
T |
|
| Q |
554 |
agccgtaaaatggcttatgagattgaaaaaatacaaaagaag-tttaatgatgtggtgaaagatatgtct |
622 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||||| ||||| | ||||||||||||| |
|
|
| T |
18355574 |
cgccgtaaaatggctcatgagattgaaaaaatac-aaagaagttttaaagatgttgagaaagatatgtct |
18355642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 18355106 - 18355166
Alignment:
| Q |
82 |
tctttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||| |
|
|
| T |
18355106 |
tctttttgaaggatggctgaacaaattccatacggtgttgctacaagtctcgttaacaggt |
18355166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 254 - 623
Target Start/End: Complemental strand, 10756233 - 10755867
Alignment:
| Q |
254 |
aggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgc |
353 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||||||| || ||||| |||||| | ||||| |||| || |||||||||||||||| |||||||| |
|
|
| T |
10756233 |
aggttggcttctgttgccttacgtgaatttggacggattaataatgtgaaagatgaattagaaagccttacgaagacagttgaatccatcagagctgtgc |
10756134 |
T |
|
| Q |
354 |
tccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttcatcctgctgatgacttgctaga |
453 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||| |||| | | ||| |||||||||| | ||| | |||| ||||| ||| |||| |
|
|
| T |
10756133 |
tccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatg---tgcttgttgctgcagatgatttgataga |
10756037 |
T |
|
| Q |
454 |
tgaatttgctatcgaagacatgagacacaaacgggatgaagctcgtaagaacaaagtaacacaggtgcttcattctttatctccgaatagaattgctttt |
553 |
Q |
| |
|
||||||| ||| ||||| |||| || |||| |||||||||||| |||||||||||||||| |||| ||||||||||| ||| | | | || |||| |
|
|
| T |
10756036 |
tgaatttcttattgaagatatgatacgcaaaagggatgaagctcataagaacaaagtaacaaaggtacttcattctttctctttaagcaaagctgttttt |
10755937 |
T |
|
| Q |
554 |
agccgtaaaatggcttatgagattgaaaaaatacaaaagaagtttaatgatgtggtgaaagatatgtctg |
623 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10755936 |
tgtcgtaaaatggctctagagattgaaaaaatacaaaaaggttttaatgatgtggtgaaagatatgtctg |
10755867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 10756395 - 10756335
Alignment:
| Q |
84 |
tttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggtta |
144 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||| ||||||| ||||| ||||| |
|
|
| T |
10756395 |
tttttgaaagatggctgaacaaattccatacggtgttgctcaaagcctcattaacgggtta |
10756335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 422
Target Start/End: Original strand, 8572587 - 8572755
Alignment:
| Q |
254 |
aggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgc |
353 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| ||||| || ||||| |||||| | ||||| |||| || |||||||||||||||| ||||| || |
|
|
| T |
8572587 |
aggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagacagttgaatccatcagagctgcgc |
8572686 |
T |
|
| Q |
354 |
tccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatg |
422 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||| |||| | | ||| |||||||||| |
|
|
| T |
8572687 |
tccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatg |
8572755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 8572421 - 8572481
Alignment:
| Q |
84 |
tttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggtta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||| ||||||| ||||| ||||| |
|
|
| T |
8572421 |
tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggtta |
8572481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 254 - 422
Target Start/End: Original strand, 28698547 - 28698715
Alignment:
| Q |
254 |
aggttggcttcagcggcctttcgtgaatttggacggatttatggtgtgatggatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgc |
353 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| ||||| || ||||| |||||| | ||||| |||| || |||||||||||||||| ||||| || |
|
|
| T |
28698547 |
aggttggcttctgttgccttacgtgaatttggaaggattaataatgtgaaagatgaattagaaagtcttacgaagacagttgaatccatcagagctgcgc |
28698646 |
T |
|
| Q |
354 |
tccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatg |
422 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||| |||| | | ||| |||||||||| |
|
|
| T |
28698647 |
tccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatg |
28698715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 28698381 - 28698441
Alignment:
| Q |
84 |
tttttgaaggatggctgaacaaattccatatgctgttgctgcaagcctcgttaacaggtta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||| ||||||| ||||| ||||| |
|
|
| T |
28698381 |
tttttgaaggatggctgaacaaattccacacggtgttgctcaaagcctcattaacgggtta |
28698441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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