View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_high_4 (Length: 601)
Name: NF6379_high_4
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 3 - 586
Target Start/End: Original strand, 9232575 - 9233164
Alignment:
| Q |
3 |
atccaacatatttttagaagcataatggtaagcatcttgtttgtttttggtaaataaatttaaactttacttctgtagtaaaataacatattttttgtgt |
102 |
Q |
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| T |
9232575 |
atccaacatatttttagaagcataatggtaagcatcttgtttgtttttggtaaataaatttaaactttactattgtagtaaaataacacttttttttttt |
9232674 |
T |
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| Q |
103 |
gtgtggcgatcattagcaaaataacttgagaattagtaggtttgcaaataatattgaatgatatgcttataaaacaattaatgaataataaaaatgagtg |
202 |
Q |
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| T |
9232675 |
gtgtgacgatcattagcaaaataagttgagaattagtaggtttgcaaataatattgaatgatatgcttataaaacaattaatgaataataaaaatgagtg |
9232774 |
T |
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| Q |
203 |
attatacttcatttaaattatataatacacgtat-------------caaaataattaatattgttttgtgcagggataaataaacaaaaggnnnnnnnc |
289 |
Q |
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| T |
9232775 |
attatacttcatttaaattatacaatacacgtataaaaatttactcaaaaaataattaatattgttttgtgcagggataaataaacaaaaggaaaaaaac |
9232874 |
T |
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| Q |
290 |
attgacaactagacatattgatatgtcttttaattcgtgtcaatgacacgatcagtctggctgaaaaaagattcttacaggtgatcagaccataccacag |
389 |
Q |
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| T |
9232875 |
attgacaactagacatattgatatgtcttttaattcatgtcaatgacacgatcagtctggctgaaaaaagattcttacaggtgatcagaccatacca--- |
9232971 |
T |
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| Q |
390 |
gggtcagaccacaatacacatgtacatttctactactattcatcactttatgcatctatatataccaccctcactttgatcactcttcatcactcactag |
489 |
Q |
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| T |
9232972 |
----cagaccacaatacacatgtacatttctactactattcatcactttatgcatctatatataccaccctcactttgatcactcttcatcactcactag |
9233067 |
T |
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| Q |
490 |
cactcttaatttctctcttccttcattgttca-tcacacaccctttaacttttatttcaatccctctcttttccaaatggccggtgttgaggtaaaat |
586 |
Q |
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| T |
9233068 |
cactcttaatttctctcttccttcattgttcattcacacacccttcaac-tttatttcaatccctctcttttccaaatggccagtgttgaggtaaaat |
9233164 |
T |
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