View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_high_41 (Length: 201)
Name: NF6379_high_41
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 46013708 - 46013875
Alignment:
| Q |
16 |
atcaatagtctgctccacctaaataaaataaaaaatgcatttgtagttaaagggcatgaatgtaaaattgaaggaagttggtaaagtttgaaactttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46013708 |
atcaatagtctgctccacctaaataaaataaaaaatgcatttctagttaaagggcatgaatgtaaaattgaaggaagttggtaaagtttgaaactttgga |
46013807 |
T |
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| Q |
116 |
agaaaaactttacttgggtgagagaagaaacaatttggtccttggagatgttaacagcagctctagct |
183 |
Q |
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| T |
46013808 |
agaaaaactttacttgggtgagagaagaaacaatttggtccttggagatgttaacagcagctctagct |
46013875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 46246880 - 46246713
Alignment:
| Q |
16 |
atcaatagtctgctccacctaaataaaataaaaaatgcatttgtagttaaagggcatgaatgtaaaattgaaggaagttggtaaagtttgaaactttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46246880 |
atcaatagtctgctccacctaaataaaataaaaaatgcatttctagttaaagggcatgaatgtaaaattgaaggaagttggtaaagtttgaaactttgga |
46246781 |
T |
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| Q |
116 |
agaaaaactttacttgggtgagagaagaaacaatttggtccttggagatgttaacagcagctctagct |
183 |
Q |
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| T |
46246780 |
agaaaaactttacttgggtgagagaagaaacaatttggtccttggagatgttaacagcagctctagct |
46246713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 46020059 - 46020226
Alignment:
| Q |
16 |
atcaatagtctgctccacctaaataaaataaaaaatgcatttgtagttaaagggcatgaatgtaaaattgaaggaagttggtaaagtttgaaactttgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46020059 |
atcaatagtctgctccacctaaataaaataaaaaatgcatttctagttaaagggcatgaatgtaaaattgaaggaagttggtaaagtttgaaactttgga |
46020158 |
T |
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| Q |
116 |
agaaaaactttacttgggtgagagaagaaacaatttggtccttggagatgttaacagcagctctagct |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46020159 |
agaaaaactttacttgggtgagagaagaaacaatttggtccttggagatgttgacagcagctctagct |
46020226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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