View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_high_7 (Length: 526)
Name: NF6379_high_7
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 507
Target Start/End: Original strand, 45710793 - 45711297
Alignment:
| Q |
7 |
tcgaagaatattctattctcacttgtaatggtcttaaaattagcaaagatcatatttaaaacagtaagtaattttaatgtgtatcaatagtaaattaata |
106 |
Q |
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| T |
45710793 |
tcgaacaatattctgttctcacttgtaatggtcttaaaattagcaaagatcatatttaaaacagtaagtaattttaatgtgtatcaatagtaaattaata |
45710892 |
T |
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| Q |
107 |
tttactcaaatatgtcacttgatcaaattttgaaagannnnnnnatggttagaaaatgttgttgttaaaacaggttagtggtgggtaaatcatgtctggt |
206 |
Q |
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| T |
45710893 |
tttactcaaatatgtcacttgatcaaattttgaaagatttttttatggttagaaaatgttgttgttaaaacaggttagtggtgggtaaatcatgtctggt |
45710992 |
T |
|
| Q |
207 |
cnnnnnnnn-tattgggttggagccgtcgaactattcatacaaatcatcttgcataatacgctcttttattatatttcacttaaacatgagttaactaag |
305 |
Q |
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| T |
45710993 |
caaaaaaaaatcttgggttggagccgtcgaactattcatacaaatcatcttgcataatacgttcttttattatatttcacttaaacatgagttaactaag |
45711092 |
T |
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| Q |
306 |
ttcaacttgacttggacaagctaatgtatatgtttcttaacagttaacacccttaatcctacattctcaattgactattaaccagaaaacaagaaaaaca |
405 |
Q |
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| T |
45711093 |
ttcaacttgacttggacaagctaatgtatatgtttcttaacagttaacacccttaatcctacattctcaattgactattaaccagaaaacaagaaaaaca |
45711192 |
T |
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| Q |
406 |
acttttatatccctaagcctacgttctcacttaccacccgtatataggttatactaagaaactcaaatatgaagc---atgaccaccctaaccaccccat |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45711193 |
acttttatatccctaagcctacgttctcacttaccacccgtatataggttatactaagaaactcaaatatgaagcatgatgaccaccctaaccaccccat |
45711292 |
T |
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| Q |
503 |
cgttg |
507 |
Q |
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| T |
45711293 |
cgttg |
45711297 |
T |
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