View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6379_high_9 (Length: 493)
Name: NF6379_high_9
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 40531479 - 40531803
Alignment:
| Q |
13 |
agcataggcaaaagggattacataattgtactggtaaacattatacagtgtgagattgctcactatataactaaggtacactcctagagtttcttgagtc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531479 |
agcataggcaaaagggattacataattgtactggtaaacattatacagtgtgagattgctcactatataactaaggtacactcctagagtttcttgagtc |
40531578 |
T |
|
| Q |
113 |
agttaggaagttgtaactgattcaactatatattcattgaatcctttgtaatagttaacacttgaaacagaaaaacaaaaataatggaagttttgataac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40531579 |
agttaggaagttgtaactgattcaactatatattcattgaatcctttgtaatagttaacacttgaaacagaaaaacaaaaataatggaagttttgataac |
40531678 |
T |
|
| Q |
213 |
aaatgaaactctatgcatgtacttcacgttcaatgtattcaaccctaattaaactgcacctccaaatcccacataccatccatccgtacactctccaatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40531679 |
aaatgaaactctatgcatgtacttcacgttcaatgtattcaaccctaattaaactgcacctccaaatcccacataccatccatccgtacactctcccatt |
40531778 |
T |
|
| Q |
313 |
tcacctgctatagatcttttgtttt |
337 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
40531779 |
tcatctgctatagatctttagtttt |
40531803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 40531798 - 40531908
Alignment:
| Q |
367 |
agttttcaccaagtgcattgaatactagttcataatttattttatttatttattcaaatcatccatttaattgatagactaagtatatgtcgtatccaac |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40531798 |
agttttcaccaagtgcattgaatactagttcataatttattttatttatttattcaaatcatccatttaattgatagactaagtatatgtcatatccaac |
40531897 |
T |
|
| Q |
467 |
attataaaagt |
477 |
Q |
| |
|
||||||||||| |
|
|
| T |
40531898 |
attataaaagt |
40531908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University