View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_1 (Length: 883)
Name: NF6379_low_1
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 415 - 788
Target Start/End: Original strand, 49104207 - 49104575
Alignment:
| Q |
415 |
ataataacttgggtgtattgcaatttacagaccatgatcaatgaataagtgtttcaagaaataatatacacgggacacaaaagtataagtttattaaagt |
514 |
Q |
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| T |
49104207 |
ataattacttgggtgtattgcaatttacagaccatgatcaatgaataagtgtttcaagaaataatatacgcgggacacaaaagtataagtttattaaagt |
49104306 |
T |
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| Q |
515 |
tattattattaagatcaattcatagattcttctcatgtgaaaactgatcctaaggaagcaatttgtggataatgactggtttgtagtattctcttgtatt |
614 |
Q |
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| T |
49104307 |
tattattattaagatcaattcatagattcttctcatgtgaaaactgatcctaaggaagcaatttgtggataatgactggtttgtagtattctcttgtatt |
49104406 |
T |
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| Q |
615 |
atatagaagatctttgaacatatccttctcaaaattatttgtatagatcaatttgagctctctgttagtatttaacagacaatatcacgttttagaccat |
714 |
Q |
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| T |
49104407 |
gtatagaagatctttgaacatatccttctcaaaattatttttatagatcaatttgagctctctgttagtatttaacagacaatatcacgttttagaccat |
49104506 |
T |
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| Q |
715 |
ggtcgtgaccaagataagataacaatcctatgttgcaatagttctctgtttaaacatcgatgaatactgtttat |
788 |
Q |
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| T |
49104507 |
ggtcgtgacc-----aagataacaatcctatgttgcaatagttctctgtttaaacatcgatgaatactgtttat |
49104575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 49103805 - 49104148
Alignment:
| Q |
16 |
atcacggtgtactagtgatttttgacacgcgttaagttttaacaaaatcacgatgttatgtagacttacaatatggggtggcgaatttcggagacccaag |
115 |
Q |
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| T |
49103805 |
atcacggtgtactagtgatttttgacacgcgttaagttttaacaacatcacgatgttatgtagacttacaatatggggtggcgaatttcggagacccaag |
49103904 |
T |
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| Q |
116 |
agccccaatgcctttgtcggacgcctcggtaacgttgctgtggtctagccatgttagggaaaacaaatgtattcttttcggaaagtgtttttgagtagtg |
215 |
Q |
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| T |
49103905 |
agccccaatgcctttgtcggacgcctcggtaacgttgttgtggtctagccatgttagggaaaacaaatgtattcttttcggaaagtgtttttgagtagtg |
49104004 |
T |
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| Q |
216 |
atagagagttttgttgtgaaaccaagaggaggtggtggagaaggaggggtgatgggtttttgtagttggggtttgtttcagatggacacttttttctaat |
315 |
Q |
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| T |
49104005 |
atagagagttttgttgtgaaaccaagaggaggtggtggagaaggaggggtgatgggtttttgtagttggggtttgtttcagatggacacttttttctaat |
49104104 |
T |
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| Q |
316 |
ggatctgtgtaccatttaataagggaagagggtcccacaaagga |
359 |
Q |
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| T |
49104105 |
ggatctgtgtaccatttaataagggaagagggtcccacaaagga |
49104148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 786 - 867
Target Start/End: Original strand, 49104612 - 49104693
Alignment:
| Q |
786 |
tatcaatatgtattttataattgggtcaattgcaagttggggcaaatcgattttaggatcaaagattcttggaccatcatat |
867 |
Q |
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| T |
49104612 |
tatcaatatgtattttataattgggtcaattgcaagttggggcaaatcgattttaggatcaaagattcttggaccatcatat |
49104693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 1725527 - 1725440
Alignment:
| Q |
81 |
ttacaatatggggtggcgaatttcggagacccaagagccccaatgcctttgtcggacgcctcggtaacgttgctgtggtctagccatg |
168 |
Q |
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| T |
1725527 |
ttacaataaagggtgacgaatttcagagacccaagaaccccaatgtctttggcgtacacctctataacgttgttgtggtcttgccatg |
1725440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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