View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6379_low_11 (Length: 442)

Name: NF6379_low_11
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6379_low_11
NF6379_low_11
[»] chr2 (9 HSPs)
chr2 (271-410)||(25417105-25417244)
chr2 (293-398)||(5783424-5783529)
chr2 (293-395)||(24079419-24079520)
chr2 (36-247)||(11593164-11593373)
chr2 (36-247)||(11605080-11605289)
chr2 (36-248)||(11612528-11612737)
chr2 (39-115)||(11687382-11687458)
chr2 (293-395)||(44481357-44481458)
chr2 (39-105)||(11724436-11724502)
[»] scaffold0214 (2 HSPs)
scaffold0214 (297-410)||(21758-21871)
scaffold0214 (296-409)||(29124-29241)
[»] chr4 (7 HSPs)
chr4 (293-410)||(19112009-19112125)
chr4 (271-410)||(52374281-52374419)
chr4 (293-395)||(18811237-18811338)
chr4 (295-410)||(43593524-43593642)
chr4 (271-410)||(43593740-43593879)
chr4 (271-410)||(50377351-50377490)
chr4 (293-363)||(16612269-16612339)
[»] chr6 (14 HSPs)
chr6 (271-410)||(15906988-15907126)
chr6 (271-409)||(21393321-21393459)
chr6 (293-410)||(14463538-14463654)
chr6 (305-410)||(18715332-18715436)
chr6 (313-409)||(18801369-18801465)
chr6 (295-410)||(20881893-20882007)
chr6 (295-410)||(21683220-21683334)
chr6 (327-409)||(20025668-20025750)
chr6 (293-399)||(7456889-7457005)
chr6 (342-402)||(31877106-31877166)
chr6 (271-400)||(31569333-31569466)
chr6 (271-404)||(23160672-23160812)
chr6 (354-410)||(18767651-18767707)
chr6 (339-393)||(19382911-19382965)
[»] chr8 (8 HSPs)
chr8 (293-410)||(22932080-22932197)
chr8 (305-410)||(13586211-13586316)
chr8 (293-402)||(43974598-43974707)
chr8 (293-410)||(8223777-8223893)
chr8 (315-410)||(7964848-7964942)
chr8 (271-404)||(44967470-44967603)
chr8 (295-385)||(43974731-43974821)
chr8 (325-409)||(16047013-16047101)
[»] scaffold0041 (1 HSPs)
scaffold0041 (271-402)||(32182-32313)
[»] chr3 (1 HSPs)
chr3 (294-403)||(7567012-7567121)
[»] scaffold0590 (1 HSPs)
scaffold0590 (271-404)||(8963-9096)
[»] chr5 (8 HSPs)
chr5 (271-410)||(42882968-42883106)
chr5 (271-404)||(35328835-35328968)
chr5 (294-404)||(35329255-35329365)
chr5 (271-401)||(38925462-38925593)
chr5 (295-410)||(22545710-22545823)
chr5 (305-381)||(32727016-32727092)
chr5 (293-344)||(19835224-19835275)
chr5 (339-401)||(20667649-20667711)
[»] scaffold0159 (1 HSPs)
scaffold0159 (293-398)||(36887-36992)
[»] chr1 (10 HSPs)
chr1 (299-409)||(42958593-42958703)
chr1 (271-402)||(44201574-44201705)
chr1 (271-402)||(15723193-15723324)
chr1 (293-410)||(19193704-19193818)
chr1 (325-410)||(18504814-18504899)
chr1 (293-409)||(46757945-46758062)
chr1 (295-369)||(46351939-46352014)
chr1 (361-402)||(7487286-7487327)
chr1 (352-392)||(24249641-24249681)
chr1 (361-393)||(43097928-43097960)
[»] scaffold0557 (1 HSPs)
scaffold0557 (295-410)||(6484-6598)
[»] chr7 (7 HSPs)
chr7 (271-401)||(3568535-3568666)
chr7 (293-395)||(12314863-12314964)
chr7 (293-395)||(18535710-18535811)
chr7 (271-410)||(1966334-1966473)
chr7 (295-395)||(13796498-13796598)
chr7 (340-401)||(48520008-48520069)
chr7 (298-402)||(39703023-39703131)
[»] scaffold0054 (2 HSPs)
scaffold0054 (300-404)||(49725-49830)
scaffold0054 (293-401)||(28702-28811)
[»] scaffold0283 (1 HSPs)
scaffold0283 (271-404)||(13604-13737)
[»] scaffold0760 (1 HSPs)
scaffold0760 (293-404)||(143-254)
[»] scaffold0726 (1 HSPs)
scaffold0726 (325-410)||(5576-5661)
[»] scaffold0337 (1 HSPs)
scaffold0337 (305-395)||(138-228)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 25417105 - 25417244
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25417105 tgcccgtctgtccgctctttctactgcgctaacgcatgtaattcataaacattatgtttttcaacatcaatgtttgtttagtctttcttgatatatcttg 25417204  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  25417205 gagaaaattattagaattaaaagaatgatcaagcttgatc 25417244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 5783529 - 5783424
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  5783529 actgcgctaacgcatgtaactcataaacagtatgtttttcaacatcaatgttggtttagtttttcttaatatatcttggagaaaattattagaattaaaa 5783430  T
Q  393 gaatga 398  Q
    ||||||    
T  5783429 gaatga 5783424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 24079520 - 24079419
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24079520 actgcgctaacgcatgtaactcataaacagtatgttttttaacatcaatgtt-gtttagtttttcttgatatatcttggagaaaattattagaattaaaa 24079422  T
Q  393 gaa 395  Q
    |||    
T  24079421 gaa 24079419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 247
Target Start/End: Original strand, 11593164 - 11593373
Alignment:
Q  36 actattgatattcttatctaatgaattgattcgatcacaatctcattttattgatgaaactcattgatatcacagactttnnnnnnntcaaatctataaa 135  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||       |  ||||||||||    
T  11593164 actattgatattcttatcaaatcaattgattcgatcacaatctcatcttattggtgaaacacattgatatcacagcctttaataaaat-taatctataaa 11593262  T
Q  136 attaaatccataaaagttagatatggtttattaatgatccgtttcttttc-ttctcttctttgctagagtttgaattcaacatctcaaacttattacact 234  Q
     | || | ||||||||||||  ||||||||||||||||  |||| ||||| |||||||||| | | ||||||||  |||| ||||||||||||| || ||    
T  11593263 ttaaagttcataaaagttag--atggtttattaatgatatgttttttttctttctcttcttagttcgagtttgagctcaagatctcaaacttatcaccct 11593360  T
Q  235 ttagcgtaaataa 247  Q
    |||| ||||||||    
T  11593361 ttagtgtaaataa 11593373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 247
Target Start/End: Original strand, 11605080 - 11605289
Alignment:
Q  36 actattgatattcttatctaatgaattgattcgatcacaatctcattttattgatgaaactcattgatatcacagactttnnnnnnntcaaatctataaa 135  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||       |  ||||||||||    
T  11605080 actattgatattcttatcaaatcaattgattcgatcacaatctcatcttattggtgaaacacattgatatcacagcctttaataaaat-taatctataaa 11605178  T
Q  136 attaaatccataaaagttagatatggtttattaatgatccgtttcttttc-ttctcttctttgctagagtttgaattcaacatctcaaacttattacact 234  Q
     | || | ||||||||||||  ||||||||||||||||  |||| ||||| |||||||||| | | ||||||||  |||| ||||||||||||| || ||    
T  11605179 ttaaagttcataaaagttag--atggtttattaatgatatgttttttttctttctcttcttagttcgagtttgagctcaagatctcaaacttatcaccct 11605276  T
Q  235 ttagcgtaaataa 247  Q
    |||| ||||||||    
T  11605277 ttagtgtaaataa 11605289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 11612528 - 11612737
Alignment:
Q  36 actattgatattcttatctaatgaattgattcgatcacaatctcattttattgatgaaactcattgatatcacagactttnnnnnnntcaaatctataaa 135  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||||| |||||| |||||| |||||||||||||| ||||       |  ||||||||||    
T  11612528 actattgatattcttatcaaattaattgattcgatctcaatctcatcttattggtgaaacacattgatatcacagcctttaataaaat-taatctataaa 11612626  T
Q  136 attaaatccataaaagttagatatggtttattaatgatccgtttcttttcttctcttctttgctagagtttgaattcaacatctcaaacttattacactt 235  Q
     | |||| ||||||||||||  ||||||||||||||||  |||| ||||  | |||| |||| | ||||||||| |||| |||||||| |||| || |||    
T  11612627 ttaaaattcataaaagttag--atggtttattaatgatatgtttttttttctttcttttttgttcgagtttgaactcaagatctcaaatttatcaccctt 11612724  T
Q  236 tagcgtaaataag 248  Q
    ||| |||||||||    
T  11612725 tagtgtaaataag 11612737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 11687458 - 11687382
Alignment:
Q  39 attgatattcttatctaatgaattgattcgatcacaatctcattttattgatgaaactcattgatatcacagacttt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  11687458 attgatattcttatctaatgaattgattcgatcacaatctcattttattggtgaaactcattgatatcacagccttt 11687382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 44481357 - 44481458
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    |||||||||| |||||||| ||||||||| | |||||||||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||| |    
T  44481357 actgcgctaatacatgtaactcataaacaatatgtttttcaacatcaatg-ttgtttagtttttttaaatatatcttggagaaaattattagaattaaga 44481455  T
Q  393 gaa 395  Q
    |||    
T  44481456 gaa 44481458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 11724436 - 11724502
Alignment:
Q  39 attgatattcttatctaatgaattgattcgatcacaatctcattttattgatgaaactcattgatat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  11724436 attgatattcttatctaatgaattgattcgatcacaatctcattttgttggtgaaactcattgatat 11724502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 21758 - 21871
Alignment:
Q  297 cgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaat 396  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21758 cgctaacgcatgtaactcataaacattatgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaat 21857  T
Q  397 gatcaagcctgatc 410  Q
    |||||||| |||||    
T  21858 gatcaagcttgatc 21871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 409
Target Start/End: Complemental strand, 29241 - 29124
Alignment:
Q  296 gcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagt----ttttcttgatatatcttggagaaaattattagaattaaa 391  Q
    |||||||| ||||||| |||||| || | |||||||||||||||| |||  ||||||    |||| |  ||||||||| |||||||||||||||||||||    
T  29241 gcgctaacgcatgtaactcataagcagtatgtttttcaacatcaacgttgctttagttttcttttttatatatatcttcgagaaaattattagaattaaa 29142  T
Q  392 agaatgatcaagcctgat 409  Q
    |||| |||||||| ||||    
T  29141 agaacgatcaagcttgat 29124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 19112125 - 19112009
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19112125 actgcgctaacacatgtaactcataaacaatatgtttttcaacatcaatgtt-gtttagtttttcttgatatatcttggagaaaattattagaattaaaa 19112027  T
Q  393 gaatgatcaagcctgatc 410  Q
    |||||||||||| |||||    
T  19112026 gaatgatcaagcttgatc 19112009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 52374281 - 52374419
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||    
T  52374281 tgcccgtctgtccgctctttctactgcgctaacgcatgtaactcataaacagtatgtttttcaacatcaatgtt-gtttactttttcttgatatatcttg 52374379  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  52374380 gagaaaattattagaattaaaagaatgatcaagcttgatc 52374419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 18811338 - 18811237
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  18811338 actgcgctaacgcatgtaactcataaatagtatgtttttcaacatcaatgtt-gtttagtttttcttgatatatcttggagaaaattattagaattcaaa 18811240  T
Q  393 gaa 395  Q
    |||    
T  18811239 gaa 18811237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 295 - 410
Target Start/End: Complemental strand, 43593642 - 43593524
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgt-----ttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaatta 389  Q
    ||||||||||||||||| ||||||||| | |||     ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||  |||    
T  43593642 tgcgctaacacatgtaactcataaacaatatgtgttttttttcaacatcaatgatggtttagtttttcttgatatatcttggagaaaattattag--tta 43593545  T
Q  390 aaagaatgatcaagcctgatc 410  Q
    |||||||||| |||| |||||    
T  43593544 aaagaatgataaagcttgatc 43593524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 43593879 - 43593740
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgttttt---caacatcaatgtttgtttagtttttcttgatatatc 367  Q
    |||||||||||||||       ||||||||||||||||||| ||||||||| | |||||||   ||||||||||| | ||||||||||| ||||||||||    
T  43593879 tgcccgtctgtccgctctttctactgcgctaacacatgtaactcataaacaatatgttttttttcaacatcaatgatggtttagttttt-ttgatatatc 43593781  T
Q  368 ttggagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    |||||||||||||||||  ||||||||||||| |||| |||||    
T  43593780 ttggagaaaattattag--ttaaaagaatgatgaagcttgatc 43593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 50377351 - 50377490
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       |||||| |||| ||||||| ||||||||| | ||||| | |||||||||||| ||||| | ||||||| ||||| |||    
T  50377351 tgcccgtctgtccgctctttctactgcgttaacgcatgtaactcataaacagtatgtttgtgaacatcaatgttggtttattgtttcttggtatattttg 50377450  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    |||||||||||||||||||||||||||  ||||| |||||    
T  50377451 gagaaaattattagaattaaaagaatggccaagcttgatc 50377490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 16612269 - 16612339
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgata 363  Q
    ||||||||||| ||||||| ||| ||||| | ||||||||||||| |||||| ||||| ||||||| ||||    
T  16612269 actgcgctaacgcatgtaactcacaaacaatatgtttttcaacattaatgttggtttaatttttctggata 16612339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 15907126 - 15906988
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  15907126 tgcccgtctgtccgctctttctactgcgctaacgcatgtaactcataaacaatatgtttttcaacatcaatgtt-gtttagtttttcttgatatatcttg 15907028  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15907027 gagaaaattattagaattaaaagaatgatcaagcttgatc 15906988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 271 - 409
Target Start/End: Complemental strand, 21393459 - 21393321
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||||| | ||||| | |||||||||||||||||||| |||||||||||||| ||||||||||    
T  21393459 tgcccgtctgtccgctctttctactgcgctaacgcatgtaaataaaaaacaatgtgtttttcaacatcaatgttggtttagtttttcttaatatatcttg 21393360  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgat 409  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  21393359 gagaaaattattagaattaaaagaatgatcaagcttgat 21393321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 14463538 - 14463654
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| | ||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14463538 actgcgctaacgcatgtaacttataaacggtatgtttttcaacatcaatgtt-gtttagtttttcttgatatatcttggagaaaattattagaattaaaa 14463636  T
Q  393 gaatgatcaagcctgatc 410  Q
    |||||||||||| |||||    
T  14463637 gaatgatcaagcttgatc 14463654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 18715332 - 18715436
Alignment:
Q  305 catgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagc 404  Q
    ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18715332 catgtaactcataaacagtatgtttttcaacatcaatgtt-gtttagtttttcttgatatatcttggagaaaattattagaattaaatgaatgatcaagc 18715430  T
Q  405 ctgatc 410  Q
     |||||    
T  18715431 ttgatc 18715436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 313 - 409
Target Start/End: Complemental strand, 18801465 - 18801369
Alignment:
Q  313 tcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagcctgat 409  Q
    ||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  18801465 tcataaacagtatgtttttcaacatcaatgttggtttagtttttcttcatatatcttggagaaaattattagaactaaaagaatgatcaagcttgat 18801369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 295 - 410
Target Start/End: Complemental strand, 20882007 - 20881893
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaaga 394  Q
    ||||||||| ||||||| ||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  20882007 tgcgctaacgcatgtaactcataaacagtatgtttt-caacatcaatgttggtttagtttttcttgatatatcttagagaacattattagaattaaaaga 20881909  T
Q  395 atgatcaagcctgatc 410  Q
    | |||||||| |||||    
T  20881908 acgatcaagcttgatc 20881893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 21683220 - 21683334
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaaga 394  Q
    ||||||||| ||||||| ||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  21683220 tgcgctaacgcatgtaactcataaacagtatgtttt-caacatcaatgttggtttagtttttcttgatatatcttagagaacattattagaattaaaaga 21683318  T
Q  395 atgatcaagcctgatc 410  Q
    | |||||||| |||||    
T  21683319 acgatcaagcttgatc 21683334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 20025750 - 20025668
Alignment:
Q  327 tttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagcctgat 409  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  20025750 tttttcaacatcaatgttagtttactttttcttgatatatcttggagaaaattattagaattaaaataaggatcaagcttgat 20025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 399
Target Start/End: Original strand, 7456889 - 7457005
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttg----------atatatcttggagaaaattatt 382  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||||||||| | |          ||||||||||||| ||||||||    
T  7456889 actgcgctaacgcatgtaactcataaacaatatgtttttcaacatcaatgttggtttagtttttttagttttttttgtatatatcttggagcaaattatt 7456988  T
Q  383 agaattaaaagaatgat 399  Q
    |||||||||||||||||    
T  7456989 agaattaaaagaatgat 7457005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 31877166 - 31877106
Alignment:
Q  342 gtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaa 402  Q
    |||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  31877166 gtttttttagtttttttttatatatcttggagaaaattattagaattaaaagaatgatcaa 31877106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 31569333 - 31569466
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagt----ttttcttgatatat 366  Q
    |||||||||||||||       |||||||||||| |||||| ||||||||| | |||||||||||||||| |||  ||||||    |||| |  ||||||    
T  31569333 tgcccgtctgtccgctctttctactgcgctaacatatgtaactcataaacaatatgtttttcaacatcaacgttgctttagttttcttttttatatatat 31569432  T
Q  367 cttggagaaaattattagaattaaaagaatgatc 400  Q
    ||| ||||||||||||||||||||||||| ||||    
T  31569433 cttcgagaaaattattagaattaaaagaacgatc 31569466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 404
Target Start/End: Complemental strand, 23160812 - 23160672
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttg-------ata 363  Q
    |||||||||||||||       |||||||||||||| |||| ||||||  | | || ||||||||||| | ||||||||||||||| ||        |||    
T  23160812 tgcccgtctgtccgctctttctactgcgctaacacaggtaactcataagtagtatgcttttcaacatcgacgtttgtttagttttttttttatatatata 23160713  T
Q  364 tatcttggagaaaattattagaattaaaagaatgatcaagc 404  Q
     ||||| ||||||||||||||||||||||||||| ||||||    
T  23160712 catctttgagaaaattattagaattaaaagaatggtcaagc 23160672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 18767707 - 18767651
Alignment:
Q  354 tttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||| ||| |||||    
T  18767707 tttcttgatatatcttggagaaaattattagcattaaaataaggatccagcttgatc 18767651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 19382965 - 19382911
Alignment:
Q  339 aatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaag 393  Q
    |||||| ||||| ||||||||||||| ||||||| ||||||| |||||| |||||    
T  19382965 aatgttggtttactttttcttgatatgtcttggacaaaattagtagaatcaaaag 19382911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 22932080 - 22932197
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22932080 actgcgctaacgcatgtaactcataaacattatatttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 22932179  T
Q  393 gaatgatcaagcctgatc 410  Q
     || |||||||| |||||    
T  22932180 aaaggatcaagcttgatc 22932197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 305 - 410
Target Start/End: Complemental strand, 13586316 - 13586211
Alignment:
Q  305 catgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagc 404  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13586316 catgtaactcataaacattatgtttttcaacatcaatgtttatttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgattaagc 13586217  T
Q  405 ctgatc 410  Q
     |||||    
T  13586216 ttgatc 13586211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 402
Target Start/End: Complemental strand, 43974707 - 43974598
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||| | ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43974707 actgcgctagcgcatgtaactcataaacaatatgtttttcaacatcaatttttgtttagtttttcttgatatatcttggagagaattattagaattaaaa 43974608  T
Q  393 gaatgatcaa 402  Q
    ||||||||||    
T  43974607 gaatgatcaa 43974598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 8223777 - 8223893
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||| ||||| ||||||| ||||||||| | ||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  8223777 actgcactaacgcatgtaactcataaacagtatgttttttaacatcaatgtt-gtttagtttttcttgatatatcttgaagaaaattattagaattaaaa 8223875  T
Q  393 gaatgatcaagcctgatc 410  Q
    |||||||||||| |||||    
T  8223876 gaatgatcaagcttgatc 8223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 315 - 410
Target Start/End: Complemental strand, 7964942 - 7964848
Alignment:
Q  315 ataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7964942 ataaacagtatgtttttcaacatcaatgtt-gtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagcttgatc 7964848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 44967470 - 44967603
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||| | |||||||||||||||| ||| | |||||||||  ||||||||||||    
T  44967470 tgcccgtctgtccgctctttctactgcgctaacgcatgtaactcataaacaatatgtttttcaacatcaaggttgggttagttttttctgatatatcttg 44967569  T
Q  371 gagaaaattattagaattaaaagaatgatcaagc 404  Q
    |||||||||||||||||| |||||||||||||||    
T  44967570 gagaaaattattagaattgaaagaatgatcaagc 44967603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 43974821 - 43974731
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattaga 385  Q
    ||||||||| ||||||| ||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||    
T  43974821 tgcgctaacgcatgtaactcataaacaatatgtttttcaacatcaattttcatttagtttttcttgatatatcttggagagaattattaga 43974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 16047101 - 16047013
Alignment:
Q  325 tgtttttcaacatcaatgtttgtttagtttttc--ttgatata--tcttggagaaaattattagaattaaaagaatgatcaagcctgat 409  Q
    |||||||||||||||| |||||||||||||||   || |||||  |||| || ||||||||||||||||||||||||||||||| ||||    
T  16047101 tgtttttcaacatcaacgtttgtttagttttttcttttatatacatcttcgaaaaaattattagaattaaaagaatgatcaagcttgat 16047013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 271 - 402
Target Start/End: Complemental strand, 32313 - 32182
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||    
T  32313 tgcccgtctgtccgctttttctactgcgctaacgcatgtaactcataaatattatatttttcaacatcaatgtttgtttaggttttcttgatatatcttg 32214  T
Q  371 gagaaaattattagaattaaaagaatgatcaa 402  Q
    ||||||||||||||||||||||||||||||||    
T  32213 gagaaaattattagaattaaaagaatgatcaa 32182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 294 - 403
Target Start/End: Original strand, 7567012 - 7567121
Alignment:
Q  294 ctgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaag 393  Q
    |||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  7567012 ctgcgctaacgcatgcaaatcatgaacattatgtttttcaacatcaatgtttgtttagtttttcttgatatatcttagaaaaaattattagaattaaaag 7567111  T
Q  394 aatgatcaag 403  Q
    ||||||||||    
T  7567112 aatgatcaag 7567121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 8963 - 9096
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||||| | ||||| | |||||||||||||||||||| |||||||||||||| ||||||||||    
T  8963 tgcccgtctgtccgctctttctactgcgctaacgcatgtaaataaaaaacaatgtgtttttcaacatcaatgttggtttagtttttcttaatatatcttg 9062  T
Q  371 gagaaaattattagaattaaaagaatgatcaagc 404  Q
    ||||||||||||||||||||||||||||||||||    
T  9063 gagaaaattattagaattaaaagaatgatcaagc 9096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 42883106 - 42882968
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||    
T  42883106 tgcccgtctgtccgctctttttactgcgctaacgcatgtaactcataaacaatatgttttttaacatcaatgtt-gtttagtttttcttgatatatcttg 42883008  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
     ||||||||||||||||||||||||||||||||| |||||    
T  42883007 aagaaaattattagaattaaaagaatgatcaagcttgatc 42882968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 35328835 - 35328968
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||||||||||| ||||||||| | |||||||||||||||| ||| | |||||||||  ||||||||||||    
T  35328835 tgcccgtctgtccgctctttctactgcgctaacacatgtaactcataaacaatatgtttttcaacatcaaggttgggttagttttttctgatatatcttg 35328934  T
Q  371 gagaaaattattagaattaaaagaatgatcaagc 404  Q
    |||||||||||||||||| |||||||||||||||    
T  35328935 gagaaaattattagaattgaaagaatgatcaagc 35328968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 35329255 - 35329365
Alignment:
Q  294 ctgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaag 393  Q
    |||||||||| ||||||| ||||||||| | |||||||||||||||| ||| | |||||||||  |||||||||||||||||||||||||||||| ||||    
T  35329255 ctgcgctaacgcatgtaactcataaacaatatgtttttcaacatcaaggttgggttagttttttctgatatatcttggagaaaattattagaattgaaag 35329354  T
Q  394 aatgatcaagc 404  Q
    |||||||||||    
T  35329355 aatgatcaagc 35329365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 271 - 401
Target Start/End: Original strand, 38925462 - 38925593
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaat-gtttgtttagtttttcttgatatatctt 369  Q
    |||||||||||||||       ||| ||||||||||||||| | ||||||| | ||||||||||||||||  ||| ||||| ||||||||||||||||||    
T  38925462 tgcccgtctgtccgctctttctactacgctaacacatgtaatttataaacagtatgtttttcaacatcaaaagttggtttattttttcttgatatatctt 38925561  T
Q  370 ggagaaaattattagaattaaaagaatgatca 401  Q
    ||||||||||||||||||||||||||||||||    
T  38925562 ggagaaaattattagaattaaaagaatgatca 38925593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 295 - 410
Target Start/End: Complemental strand, 22545823 - 22545710
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaaga 394  Q
    ||||||||| ||||||| |||||||||   |||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  22545823 tgcgctaacgcatgtaactcataaacagaatgtttt-caacatcaatgtt-gtttagtttttcttgatatatcttagagaatattattagaattaaaaga 22545726  T
Q  395 atgatcaagcctgatc 410  Q
    | |||||||| |||||    
T  22545725 acgatcaagcttgatc 22545710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 381
Target Start/End: Complemental strand, 32727092 - 32727016
Alignment:
Q  305 catgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattat 381  Q
    ||||||| ||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||    
T  32727092 catgtaactcataaacagtatgtttttcaacatcaatgttggtttagtttttattgatatatcttgaataaaattat 32727016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 19835275 - 19835224
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtt 344  Q
    ||||||||||| ||||||| ||||||||| | ||||||||||||||||||||    
T  19835275 actgcgctaacgcatgtaactcataaacagtatgtttttcaacatcaatgtt 19835224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 20667649 - 20667711
Alignment:
Q  339 aatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatca 401  Q
    |||||||||||| ||||| ||||| |||| |||| ||||||||||||||| |||||| |||||    
T  20667649 aatgtttgtttactttttattgatttatcctggacaaaattattagaatttaaagaaagatca 20667711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 36992 - 36887
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36992 actgcgctaacgcatgtaactcataaacagtatgtttttcaacatcaatgttggtttagtttttcttaatatatcttggagaaaattattagaattaaaa 36893  T
Q  393 gaatga 398  Q
    ||||||    
T  36892 gaatga 36887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 299 - 409
Target Start/End: Complemental strand, 42958703 - 42958593
Alignment:
Q  299 ctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatga 398  Q
    ||||| ||||||| || |||||| | |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42958703 ctaacgcatgtaactcgtaaacaatatgtttttcaacatcaatgttggtttagtttttcttgatatatattggagaaaattattagaattaaaagaatga 42958604  T
Q  399 tcaagcctgat 409  Q
    |||||| ||||    
T  42958603 tcaagcttgat 42958593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 271 - 402
Target Start/End: Complemental strand, 44201705 - 44201574
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||| ||| ||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||||    
T  44201705 tgcccgtctgtccgctctttctactgcgctaacgcatataactcataaacaatatgtttttcaacatcaatgttggtttagtttttcttgatgtatcttg 44201606  T
Q  371 gagaaaattattagaattaaaagaatgatcaa 402  Q
     |||||||||||||||||| ||||||||||||    
T  44201605 cagaaaattattagaattagaagaatgatcaa 44201574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 271 - 402
Target Start/End: Complemental strand, 15723324 - 15723193
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||| | ||||||| |||||||||||| ||||| | ||||||| |||||| ||    
T  15723324 tgcccgtctgtccgctctttctactgcgctaacgcatgtaactcataaacagtatgtttttgaacatcaatgttggtttattgtttcttggtatatcctg 15723225  T
Q  371 gagaaaattattagaattaaaagaatgatcaa 402  Q
    ||||||||||||||||||||||||||||||||    
T  15723224 gagaaaattattagaattaaaagaatgatcaa 15723193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 19193818 - 19193704
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||||| | ||||||||||||| |||||| |||||||||||||||   ||||||| |||||||||||||||||| ||    
T  19193818 actgcgctaacgcatgtaactcataaacaatatgtttttcaacattaatgttggtttagtttttcttg---tatcttgcagaaaattattagaattagaa 19193722  T
Q  393 gaatgatcaagcctgatc 410  Q
    |||||||||||| |||||    
T  19193721 gaatgatcaagcttgatc 19193704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 325 - 410
Target Start/End: Original strand, 18504814 - 18504899
Alignment:
Q  325 tgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  18504814 tgtttttcaacatcaatattgttttagtttttcttgatatatcttggagaaaattattagaattaaaagaacgatcaagcttgatc 18504899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 409
Target Start/End: Complemental strand, 46758062 - 46757945
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagt-ttttcttgatatatcttggagaaaattattagaattaaa 391  Q
    |||| |||||| ||||||| ||||||||| | ||||||| || ||||||||| ||||||| |||| || ||||||||||||||||||||| || ||||||    
T  46758062 actgggctaacgcatgtaactcataaacaatatgttttttaatatcaatgttggtttagttttttttttatatatcttggagaaaattataagcattaaa 46757963  T
Q  392 agaatgatcaagcctgat 409  Q
    | || |||||||| ||||    
T  46757962 ataaggatcaagcttgat 46757945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 46351939 - 46352014
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatc-aatgtttgtttagtttttcttgatatatctt 369  Q
    ||||||||||||||||| | ||||| | | |||||||||||||| || ||| ||||||||||||||||||||||||    
T  46351939 tgcgctaacacatgtaacttataaataatatgtttttcaacatcaaaagttggtttagtttttcttgatatatctt 46352014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 402
Target Start/End: Complemental strand, 7487327 - 7487286
Alignment:
Q  361 atatatcttggagaaaattattagaattaaaagaatgatcaa 402  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  7487327 atatatcttcgagaaaattattagaattaaaagaacgatcaa 7487286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 24249641 - 24249681
Alignment:
Q  352 tttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  24249641 tttttcttgatatatcttgaacaaaattattagaattaaaa 24249681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 43097960 - 43097928
Alignment:
Q  361 atatatcttggagaaaattattagaattaaaag 393  Q
    |||||||||||| ||||||||||||||||||||    
T  43097960 atatatcttggacaaaattattagaattaaaag 43097928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 295 - 410
Target Start/End: Original strand, 6484 - 6598
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaaga 394  Q
    ||||||||| ||||||| ||||||| | | ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6484 tgcgctaacgcatgtaactcataaataatatgtttttcaacattaatgtt-gtttagtttttcatgatatatcttggagaaaattattagaattaaaaga 6582  T
Q  395 atgatcaagcctgatc 410  Q
    |||||||||| |||||    
T  6583 atgatcaagcttgatc 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 271 - 401
Target Start/End: Original strand, 3568535 - 3568666
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaat-gtttgtttagtttttcttgatatatctt 369  Q
    |||||||||||||||       ||||||||||||||||||| | ||||||| | ||||||||||||||||  ||| ||||| ||||||||||||||||||    
T  3568535 tgcccgtctgtccgctctttctactgcgctaacacatgtaatttataaacagtatgtttttcaacatcaaaagttggtttattttttcttgatatatctt 3568634  T
Q  370 ggagaaaattattagaattaaaagaatgatca 401  Q
    ||||||||||||||||||||||||||||||||    
T  3568635 ggagaaaattattagaattaaaagaatgatca 3568666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 12314863 - 12314964
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    |||||| |||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  12314863 actgcgttaacgcatgtaactcataaacagtatgtttttcaacatcaatgtt-gtttagtttttctttatatatcttggagaaaattattagaattaaaa 12314961  T
Q  393 gaa 395  Q
    |||    
T  12314962 gaa 12314964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 18535710 - 18535811
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    ||||||||||| ||||||| ||||||||| | |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18535710 actgcgctaacgcatgtaactcataaacagtatgtttttcaacaacaatgtt-gtttagattttcttgatatatcttggagaaaattattagaattaaaa 18535808  T
Q  393 gaa 395  Q
    |||    
T  18535809 gaa 18535811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 1966334 - 1966473
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       |||||| |||| ||||||| ||||||||| | | ||||| |||||| ||||| ||||| | ||||||| |||||| ||    
T  1966334 tgcccgtctgtccgctctttctactgcgttaacgcatgtaactcataaacagtatatttttgaacatcgatgttggtttattgtttcttggtatatcctg 1966433  T
Q  371 gagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  1966434 gagaaaattattagaattacaagaatgatcaagcttgatc 1966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 13796598 - 13796498
Alignment:
Q  295 tgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttag-tttttcttgatatatcttggagaaaattattagaattaaaag 393  Q
    |||||||||  |||||| |||||||||   ||||||| ||||||||||||  ||||| ||||||||||||||||||  | ||||||||||||||||||||    
T  13796598 tgcgctaacgtatgtaactcataaacaacgtgttttttaacatcaatgttgctttagttttttcttgatatatctt-aacaaaattattagaattaaaag 13796500  T
Q  394 aa 395  Q
    ||    
T  13796499 aa 13796498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 48520008 - 48520069
Alignment:
Q  340 atgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatgatca 401  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  48520008 atgttggttttgtttttcttaatatatcttggagaaaattattaaaattaaaagaaagatca 48520069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 39703131 - 39703023
Alignment:
Q  298 gctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagt----ttttcttgatatatcttggagaaaattattagaattaaaag 393  Q
    |||||| |||||||  ||||| || | |||||||||||||||| |||  ||||||    |||| |  ||||||||| |||||||||||||||||||||||    
T  39703131 gctaacccatgtaacgcataagcagtatgtttttcaacatcaacgttgctttagttttcttttttatatatatcttcgagaaaattattagaattaaaag 39703032  T
Q  394 aatgatcaa 402  Q
    || ||||||    
T  39703031 aacgatcaa 39703023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 49725 - 49830
Alignment:
Q  300 taacacatgtaaatcataaacattttgtttttcaacatcaat-gtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatga 398  Q
    |||||||||||| | ||||||| | ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49725 taacacatgtaatttataaacagtatgtttttcaacatcaaaagttggtttagtttttcttgatatatcttggagaaaattattagaattaaaagaatga 49824  T
Q  399 tcaagc 404  Q
    ||||||    
T  49825 tcaagc 49830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 401
Target Start/End: Complemental strand, 28811 - 28702
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagttttt-cttgatatatcttggagaaaattattagaattaaa 391  Q
    |||||| ||||  |||||| |||||||||   ||||||| || |||||||||  |||||||||| |||| ||||||||| | ||||||||||||||||||    
T  28811 actgcgttaacgtatgtaactcataaacaacgtgttttttaatatcaatgttgatttagttttttcttggtatatcttgaacaaaattattagaattaaa 28712  T
Q  392 agaatgatca 401  Q
    |||| |||||    
T  28711 agaaagatca 28702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 271 - 404
Target Start/End: Original strand, 13604 - 13737
Alignment:
Q  271 tgcccgtctgtccgcnnnnnnnactgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttg 370  Q
    |||||||||||||||       ||||||||||| ||||||| ||||||||| | |||||||||||||||| ||| | |||||||||  ||||||||||||    
T  13604 tgcccgtctgtccgctctttctactgcgctaacgcatgtaactcataaacaatatgtttttcaacatcaaggttgggttagttttttctgatatatcttg 13703  T
Q  371 gagaaaattattagaattaaaagaatgatcaagc 404  Q
    |||||||||||||||||| |||||||||||||||    
T  13704 gagaaaattattagaattgaaagaatgatcaagc 13737  T

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Target: scaffold0760 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 254 - 143
Alignment:
Q  293 actgcgctaacacatgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaa 392  Q
    |||||| |||| ||||||| || |||||| | |||||||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||||||| ||    
T  254 actgcgataacgcatgtaactcgtaaacagtatgtttttcaacatcaatgttggtttagtttttattgatatatatttgagaaaattattagaattagaa 155  T
Q  393 gaatgatcaagc 404  Q
    ||||||||||||    
T  154 gaatgatcaagc 143  T

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Target: scaffold0726 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 325 - 410
Target Start/End: Complemental strand, 5661 - 5576
Alignment:
Q  325 tgtttttcaacatcaatgtttgtttagtttttc-ttgatatatcttggagaaaattattagaattaaaagaatgatcaagcctgatc 410  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  5661 tgtttttcaacatcaatgtta-tttagtttttcattgatatatcttggagaaaattattagaattaaaagaatgatcatgcttgatc 5576  T

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Target: scaffold0337 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 395
Target Start/End: Complemental strand, 228 - 138
Alignment:
Q  305 catgtaaatcataaacattttgtttttcaacatcaatgtttgtttagtttttcttgatatatcttggagaaaattattagaattaaaagaa 395  Q
    ||||||| ||||||||| | ||||||||||||||||||||  |||||||||||||||||||||||| | |||||||| | |||||||||||    
T  228 catgtaactcataaacaatatgtttttcaacatcaatgttgatttagtttttcttgatatatcttgaacaaaattataataattaaaagaa 138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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