View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_12 (Length: 397)
Name: NF6379_low_12
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 4 - 357
Target Start/End: Complemental strand, 38117120 - 38116767
Alignment:
| Q |
4 |
cgagagagatgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
103 |
Q |
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| T |
38117120 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
38117021 |
T |
|
| Q |
104 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaagtgaaagatagtttaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117020 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaagtgaaagatagtttaaa |
38116921 |
T |
|
| Q |
204 |
cattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgttttccctgattccaagagct |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116920 |
cattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgttttccctgattccaagagct |
38116821 |
T |
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| Q |
304 |
cagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatct |
357 |
Q |
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| T |
38116820 |
cagatacctacatgaaatccacaattaaacatttcaaagatttaacattcatct |
38116767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 38160947 - 38160568
Alignment:
| Q |
3 |
tcgagagagatgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccat |
102 |
Q |
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| T |
38160947 |
tcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctttgatttcttcctgccat |
38160848 |
T |
|
| Q |
103 |
ttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaa-gtgaaagatagttta |
201 |
Q |
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||||| |||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||||| |
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| T |
38160847 |
ttttcgacctgctccttgtgaatcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatattaaaagtgaaagatagtttc |
38160748 |
T |
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| Q |
202 |
aacattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgttttccctgattccaagag |
301 |
Q |
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| | |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38160747 |
agctttgaatgttcaatggtaacttcataactcgcataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattccaagag |
38160648 |
T |
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| Q |
302 |
ctcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtatgatttcaagtttcaaac |
381 |
Q |
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| T |
38160647 |
ctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctacagtatgatttcaagcttcaaac |
38160568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 4 - 381
Target Start/End: Complemental strand, 49004923 - 49004545
Alignment:
| Q |
4 |
cgagagagatgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
103 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49004923 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctttgatttcttcctgccatt |
49004824 |
T |
|
| Q |
104 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattt-aagtgaaagatagtttaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49004823 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaa |
49004724 |
T |
|
| Q |
203 |
acattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgttttccctgattccaagagc |
302 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
49004723 |
acattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattccaaaagc |
49004624 |
T |
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| Q |
303 |
tcagatacctacacgaaatccacaattaaacatttcaaagatttaacattcatctagagtatgatttcaagtttcaaac |
381 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
49004623 |
tcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaaac |
49004545 |
T |
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