View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_13 (Length: 391)
Name: NF6379_low_13
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 50633794 - 50634171
Alignment:
| Q |
1 |
ttgtatagatgcgccttgggacttttgaggatatgcccaacagtgtttattttttgacgaataaagcccctttggtaaaatattgtccttcgttttacta |
100 |
Q |
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| T |
50633794 |
ttgtatagatgcgccttgggacttttgagaatatgcccaacagtgtttattttttgacgaataaagcccctttggtaaaatattgtccttcgttttacta |
50633893 |
T |
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| Q |
101 |
gttaggtaaaacaactatgcttacaaccatccttacttttcaccttgtctcgaatgcagtaaacacatttgaatgcacccgcttctggttattttctagt |
200 |
Q |
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| T |
50633894 |
gttaggtaaaacaactatgcttacaaccatccttacttttcaccttgtctcgaatgcagtaaacacatttgaatgcacccgcttctgtttattttctagt |
50633993 |
T |
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| Q |
201 |
caatattcagtttttcacatattccctgaacaagcttcttttctccatatgtaaactctagtggagattcaagacttacatttcaaatcttctgttggca |
300 |
Q |
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| T |
50633994 |
caatattcagtttttcacatattccctgaacaagttttttttcgccatatgt-aactctagtggagattcaagacttaaatttcaaatcttctgttggca |
50634092 |
T |
|
| Q |
301 |
tacatgggttgtaatttgggtttttcattgtttttaagttatatccggcttagtcatttgttgttggctaatatgtctg |
379 |
Q |
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| T |
50634093 |
tacatgggttgtaatttgggtttttcattgtttttgagttatatccggcttagtcatttgttgttggctaatatgtctg |
50634171 |
T |
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