View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_14 (Length: 383)
Name: NF6379_low_14
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 7988752 - 7988463
Alignment:
| Q |
12 |
agagacaaaagcaattttgagttgcaaaccaaataacaatctaaatataaggttatgcatttggttgttttttcatgggattgcaaaaaacatccaaaaa |
111 |
Q |
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| T |
7988752 |
agagacaaaagcaattttgagttgcaaaccaattaacaatctaaagataaggttatgcatttggttgttga--catgggattgcaaaaaacatccaaaag |
7988655 |
T |
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| Q |
112 |
gttgaaatcattgtt--gctttcatgattgaattacaaaaaatgtctacattgaagaaattgttacttgtttgtttcccttacacacagataagaaccaa |
209 |
Q |
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| T |
7988654 |
gttgaaataattgttaagctttcatggttgaattacaaaaaatgtctacattgaagaaattgttagttgtttgtttcccatacacacagataagaaccaa |
7988555 |
T |
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| Q |
210 |
acataggagtcgtggaattgtccac----nnnnnnnnnnnntattagtagtggaataataaacccaaatagcatataagcttatccattttt |
297 |
Q |
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| T |
7988554 |
acatattagtcgtggaattgtccacgaaaaaaaaaaaaaacaagtagtagtggaataataaacccaaatagcatataagcatatccattttt |
7988463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 200 - 363
Target Start/End: Complemental strand, 7997665 - 7997504
Alignment:
| Q |
200 |
taagaaccaaacataggagtcgtggaattgtccacnnnnnnnnnnnntattagtagtggaataataaacccaaatagcatataagcttatccatttttgt |
299 |
Q |
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| T |
7997665 |
taagaaccaaacataggagtcgtggaattgtccacaaaaaaaaaa--tattagtagtggaataataaaccgaaatagcatataagcatatccatttttgt |
7997568 |
T |
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| Q |
300 |
ccaaacgtataccactctaactagcaatcgacactaaaatataggttttctttcaaataacaaa |
363 |
Q |
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| T |
7997567 |
ccaaacgtataccactctaactagcaatcaacactagaatataggttttctttcaaataacaaa |
7997504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 7977709 - 7977623
Alignment:
| Q |
127 |
gctttcatgattgaattacaaaaaatgtctacattgaagaaattgttacttgtttgtttcccttacacacagataagaaccaaacat |
213 |
Q |
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| T |
7977709 |
gctttcattattgaattccaaaaaatgtctatattgtagaaattgttgctcgtttgtttctcatgcacacaaataagaaccaaacat |
7977623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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