View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6379_low_17 (Length: 346)
Name: NF6379_low_17
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 62 - 336
Target Start/End: Original strand, 27815706 - 27815979
Alignment:
| Q |
62 |
accaatcttcctagaaaacgttacacccaaaccatgaagaacaaagnnnnnnnnnnn-gccacactcatactacaactacnnnnnnnntatcaacaaaaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
27815706 |
accaatcttcctagaaaacgttacacccaaaccatgaagaacaaagaaaaaaaaaaaagccacactcatactacaactacaaaaaaaatatcaacaaaaa |
27815805 |
T |
|
| Q |
161 |
gtgatgataataatatatcagaaatttgttcttgccgttggagcccaaatcacatcagaaggaagctgagagctatacatacacgactctccaccagaaa |
260 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27815806 |
gtgatgat--taatatatcagaaatttgttcttgccgttggagcccaaatcacatcagaaggaagctgagagctatacatacacgactctccaccagaaa |
27815903 |
T |
|
| Q |
261 |
actgcggcggcgacttctcttcacagccgccggagactgagttattcctcacatcctcttctaaaggcaacctatg |
336 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
27815904 |
gctgcggcggcgacttctcttcatagccgccggagactgagttattcctcacatcctcttccaaaggtaatctatg |
27815979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University