View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6379_low_20 (Length: 331)

Name: NF6379_low_20
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6379_low_20
NF6379_low_20
[»] chr5 (12 HSPs)
chr5 (105-282)||(16967370-16967549)
chr5 (105-277)||(29499669-29499843)
chr5 (100-276)||(16594266-16594443)
chr5 (150-245)||(5899824-5899923)
chr5 (104-248)||(10008408-10008550)
chr5 (99-182)||(21575631-21575714)
chr5 (105-139)||(16967509-16967543)
chr5 (105-264)||(25603560-25603723)
chr5 (105-171)||(26009134-26009199)
chr5 (105-154)||(13739566-13739615)
chr5 (156-204)||(25255331-25255379)
chr5 (156-204)||(25319121-25319169)
[»] chr1 (24 HSPs)
chr1 (107-277)||(27260603-27260775)
chr1 (105-276)||(38289579-38289743)
chr1 (105-213)||(5466227-5466337)
chr1 (105-257)||(29936767-29936921)
chr1 (105-225)||(38762208-38762330)
chr1 (105-186)||(48872716-48872797)
chr1 (109-204)||(36775185-36775280)
chr1 (194-280)||(48872587-48872674)
chr1 (137-264)||(46039918-46040050)
chr1 (150-276)||(16583000-16583128)
chr1 (105-186)||(35414468-35414549)
chr1 (105-186)||(46859528-46859609)
chr1 (112-210)||(42824525-42824623)
chr1 (105-140)||(27260739-27260774)
chr1 (105-171)||(4604724-4604790)
chr1 (97-147)||(38289571-38289621)
chr1 (105-147)||(48872591-48872633)
chr1 (176-225)||(25302609-25302658)
chr1 (105-186)||(49660065-49660146)
chr1 (151-204)||(49804874-49804927)
chr1 (150-219)||(702424-702495)
chr1 (179-216)||(8905793-8905832)
chr1 (176-204)||(11121560-11121588)
chr1 (244-280)||(48872765-48872801)
[»] chr4 (15 HSPs)
chr4 (105-277)||(33085166-33085338)
chr4 (107-279)||(50645431-50645602)
chr4 (105-245)||(25467847-25467973)
chr4 (91-236)||(23719399-23719546)
chr4 (105-225)||(54342839-54342961)
chr4 (137-248)||(51734556-51734672)
chr4 (105-158)||(54128172-54128225)
chr4 (242-280)||(33085304-33085342)
chr4 (198-248)||(54128085-54128135)
chr4 (105-140)||(50645434-50645469)
chr4 (137-245)||(54909358-54909471)
chr4 (123-251)||(3698342-3698474)
chr4 (105-147)||(4272460-4272502)
chr4 (150-213)||(7146069-7146134)
chr4 (242-283)||(25467939-25467980)
[»] chr6 (8 HSPs)
chr6 (105-276)||(28982533-28982706)
chr6 (105-276)||(34383750-34383925)
chr6 (105-248)||(354308-354450)
chr6 (105-276)||(5456742-5456917)
chr6 (122-248)||(2204312-2204442)
chr6 (105-248)||(10729600-10729750)
chr6 (161-248)||(23632585-23632676)
chr6 (176-225)||(11742948-11742997)
[»] chr2 (12 HSPs)
chr2 (17-100)||(41830934-41831017)
chr2 (105-214)||(41317265-41317376)
chr2 (105-277)||(4969426-4969600)
chr2 (150-256)||(40210005-40210115)
chr2 (291-331)||(41831023-41831063)
chr2 (105-204)||(36193618-36193717)
chr2 (105-248)||(15260339-15260484)
chr2 (202-276)||(4285507-4285581)
chr2 (105-147)||(41317213-41317255)
chr2 (105-280)||(36003456-36003634)
chr2 (107-248)||(7438600-7438745)
chr2 (162-248)||(37468211-37468297)
[»] chr3 (25 HSPs)
chr3 (105-276)||(49875800-49875972)
chr3 (105-276)||(31350498-31350673)
chr3 (105-259)||(43898588-43898742)
chr3 (107-256)||(46114255-46114406)
chr3 (105-257)||(50886215-50886369)
chr3 (105-276)||(31425538-31425709)
chr3 (105-202)||(33976286-33976383)
chr3 (105-241)||(50886436-50886573)
chr3 (105-248)||(15927487-15927634)
chr3 (105-250)||(47479012-47479159)
chr3 (150-216)||(40367674-40367742)
chr3 (105-204)||(4617758-4617855)
chr3 (105-192)||(34608191-34608278)
chr3 (105-245)||(35986949-35987090)
chr3 (105-186)||(37143201-37143280)
chr3 (174-248)||(23553552-23553628)
chr3 (105-186)||(31930927-31931008)
chr3 (151-210)||(38017859-38017918)
chr3 (105-159)||(31664732-31664786)
chr3 (150-245)||(33389043-33389141)
chr3 (150-248)||(45292966-45293068)
chr3 (161-225)||(19961989-19962055)
chr3 (198-276)||(37143125-37143205)
chr3 (150-186)||(38910537-38910573)
chr3 (105-193)||(41610406-41610494)
[»] chr7 (12 HSPs)
chr7 (105-276)||(2819257-2819432)
chr7 (105-248)||(11778611-11778757)
chr7 (105-248)||(17117050-17117194)
chr7 (105-216)||(12651214-12651327)
chr7 (105-186)||(19223544-19223625)
chr7 (149-276)||(48814742-48814875)
chr7 (105-240)||(28565952-28566084)
chr7 (104-154)||(44255788-44255838)
chr7 (176-233)||(7990127-7990184)
chr7 (176-208)||(13437271-13437303)
chr7 (176-204)||(29763909-29763937)
chr7 (176-208)||(48639349-48639381)
[»] scaffold0481 (1 HSPs)
scaffold0481 (105-213)||(1093-1203)
[»] chr8 (17 HSPs)
chr8 (100-234)||(12171977-12172114)
chr8 (100-234)||(12416405-12416542)
chr8 (105-248)||(7612101-7612246)
chr8 (105-186)||(12946520-12946601)
chr8 (112-186)||(40649562-40649636)
chr8 (174-276)||(21514900-21515004)
chr8 (105-243)||(9306391-9306526)
chr8 (105-147)||(12946678-12946720)
chr8 (150-282)||(31266171-31266307)
chr8 (105-250)||(10309773-10309920)
chr8 (176-250)||(7602995-7603067)
chr8 (242-280)||(12946686-12946724)
chr8 (104-202)||(37792054-37792151)
chr8 (242-283)||(12946513-12946554)
chr8 (99-234)||(36023136-36023267)
chr8 (247-284)||(36023232-36023269)
chr8 (105-218)||(44712490-44712605)
[»] scaffold0687 (1 HSPs)
scaffold0687 (176-250)||(677-749)
[»] scaffold0295 (1 HSPs)
scaffold0295 (107-191)||(6038-6122)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 16967370 - 16967549
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |  ||||| |  |||||    
T  16967370 aatgatattttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattggatgataacaatagagagaataaaagaaagagaga 16967469  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcattcttctt 282  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  16967470 gaataaaagtataatgagagtataaaagagagttgtcacaaaagttgttgaaaattggatgtcaaaatatcattcctctt 16967549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 29499669 - 29499843
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaag--aga 202  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  | |    
T  29499669 aatgatattttgacatccaatttttaacaatttttagggataatctttttcctcaattcttattggatgataacaatagagagagaaaaaggaagaaaaa 29499768  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcattc 277  Q
     ||||||||||||| |||||||||| | |||||||||||||||||| |||||||| | |||||||||||| ||||    
T  29499769 taataaaagtataatgagagtataaaatagagttgtcacaaaagttgttgaaaatcggatgtcaaaatattattc 29499843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 276
Target Start/End: Original strand, 16594266 - 16594443
Alignment:
Q  100 agaaaaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaag 199  Q
    |||| ||||||||||||||| ||||||| |||    |||||| |||||  | |||||||| || ||||||||  ||||||||||||| ||||||||||||    
T  16594266 agaagaatgatattttgacaaccaatttccaat---ttttagtgacaacttatttcctctctttttattggacaataacaatagagagagaaaaaggaag 16594362  T
Q  200 ag--agaataaaagtataacgagagtat--aatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    ||  ||||||||| ||||| ||||||||   | |||||||||||||||||||| || |||| || ||||  ||||||||||    
T  16594363 agaaagaataaaaatataatgagagtatgagaaagagagttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 16594443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 5899824 - 5899923
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtataatagag--agttgtcacaaaa 245  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||| |  |||||||||||||||| || || ||||| | ||||  |||||||||||||    
T  5899824 tttttcctctcttcttattggataataacaatagagaaataaaaagaaagagagagaataaaagtacaatgaaagtatgagagagaaagttgtcacaaaa 5899923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 104 - 248
Target Start/End: Original strand, 10008408 - 10008550
Alignment:
Q  104 aaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga-agaga 202  Q
    ||||||||||| |||| |||||| | ||||||||| || ||||| ||||||  ||| | |||||||||  ||||||||||||| | |||| ||| |||||    
T  10008408 aaatgatatttggacaaccaattgtaaacaacttt-agtgacaacctttttt-tctctccttattggacaataacaatagagaga-aaaagggagagaga 10008504  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    || |||||||| || |||||||| | ||||||||||||||||||||    
T  10008505 gagtaaaagtacaatgagagtatgagagagagttgtcacaaaagtt 10008550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 21575631 - 21575714
Alignment:
Q  99 aagaaaaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaata 182  Q
    ||||||||||||||||||||| |||||||| |||||| ||||| |||||  |||||||||  |||||| ||||  |||||||||    
T  21575631 aagaaaaatgatattttgacaaccaattttaaacaacatttagtgacaacatttttcctccgttcttaatggacaataacaata 21575714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 16967543 - 16967509
Alignment:
Q  105 aatgatattttgacatccaattttcaacaactttt 139  Q
    |||||||||||||||||||||||||||||||||||    
T  16967543 aatgatattttgacatccaattttcaacaactttt 16967509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 264
Target Start/End: Original strand, 25603560 - 25603723
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaag----gaaga 200  Q
    ||||||||||||||| |||||||  ||||| |||||| || ||  |||||||||| ||  |||||||  ||||||||||||| ||| | ||    |||||    
T  25603560 aatgatattttgacaaccaatttctaacaatttttagtgataacatttttcctctttt--tattggacaataacaatagagagagagagagagaggaaga 25603657  T
Q  201 g--agaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgt 264  Q
    |  |||||||||||| || ||| |||||  |||||||||||||||||||  || |||| |||||||    
T  25603658 gagagaataaaagtacaatgagtgtatatgagagagttgtcacaaaagtcgttaaaaaatgaatgt 25603723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 26009134 - 26009199
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattgga 171  Q
    |||||||||||||||  ||||||| |||||||||||| ||||| | ||||||||| |||||||||||    
T  26009134 aatgatattttgacaatcaattttaaacaacttttagtgacaa-ccttttcctcttttcttattgga 26009199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 13739615 - 13739566
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatcttttt 154  Q
    ||||||||||||||| |||| ||| |||||||||||||||||| ||||||    
T  13739615 aatgatattttgacaaccaactttaaacaacttttagggacaaccttttt 13739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 25255379 - 25255331
Alignment:
Q  156 ctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||   | ||||||||||| |||||||||||||||||    
T  25255379 ctctattcttattggtccaaaacaatagagagagaaaaaggaagagaga 25255331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 25319169 - 25319121
Alignment:
Q  156 ctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||   | ||||||||||| |||||||||||||||||    
T  25319169 ctctattcttattggtccaaaacaatagagagagaaaaaggaagagaga 25319121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 107 - 277
Target Start/End: Original strand, 27260603 - 27260775
Alignment:
Q  107 tgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agagaga 204  Q
    |||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||  |||||||    
T  27260603 tgatattttgacatccaattttcaacaatttttagagacaatatttttcctctgttcttattggatgataacaatagagagagaaaaaggaagagagaga 27260702  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcattc 277  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||| |||||||||| |||||||||||||||||    
T  27260703 ataaaagtataatgagagtataaaagagaattgtcataaaagttgttgaaaattggatgtcaaaatatcattc 27260775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 38289743 - 38289579
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||||| ||||||||||||||||||| |||||  ||||| ||||||||||||||||  ||||||||||||| ||        |||||||    
T  38289743 aatgatattttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattggacaataacaatagagatag--------agagaga 38289652  T
Q  205 ataaaagtataacgagagtataatagagagttgt-cacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    |||||||||||| |||||||| | |||||||||| |  ||||| | |||||||||| |||| |||||||||||    
T  38289651 ataaaagtataatgagagtatgaaagagagttgtccttaaaagctgttgaaaattggatgttaaaatatcatt 38289579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 5466227 - 5466337
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagag--a 202  Q
    ||||||||||||||| |||||||| |||||||||  | ||||| ||||||||||  |||||||||||  ||||||||||||||||||||||||||||  |    
T  5466227 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaatagagaaagaaaaaggaagagaga 5466326  T
Q  203 gaataaaagta 213  Q
    |||||||||||    
T  5466327 gaataaaagta 5466337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 29936921 - 29936767
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagag- 203  Q
    ||||||||||| ||| |||||||| |||||||||  |  ||||  ||||||||| |||||||||| || |||||||||| || ||||||| ||||||||     
T  29936921 aatgatattttaacaaccaattttaaacaactttgggtaacaacttttttcctccattcttattgaataataacaatagtgagagaaaaaagaagagagc 29936822  T
Q  204 -aataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaat 257  Q
     |||||||||| || |||||||  | ||||||||||||| |||||| || |||||    
T  29936821 gaataaaagtacaatgagagtaagagagagagttgtcaccaaagttgttaaaaat 29936767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 38762208 - 38762330
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagag- 203  Q
    ||||||||||||||| |||||||| |||||||||||||||||| |||||| ||   ||||||||| |  |||| |||||||| ||||||| ||||||||     
T  38762208 aatgatattttgacaaccaattttaaacaacttttagggacaaccttttttcttccttcttattgaacaataataatagagagagaaaaatgaagagaga 38762307  T
Q  204 -aataaaagtataacgagagtat 225  Q
     ||||||||||||| ||| ||||    
T  38762308 taataaaagtataatgagtgtat 38762330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 48872797 - 48872716
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    |||||||| |||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||  || ||||||||||    
T  48872797 aatgatatattgacatccaattttcaataacttgttgggacaacctttttcctctattcttattggacaatgacaatagaga 48872716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 36775280 - 36775185
Alignment:
Q  109 atattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||| ||||||| ||||||||||  | ||||| |||||| |||| || ||||||||  ||||||||||| | |||||||||||||||||    
T  36775280 atattttgacaaccaatttccaacaactttgggtgacaaccttttttctctttttttattggacaataacaatagaaagagaaaaaggaagagaga 36775185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 48872674 - 48872587
Alignment:
Q  194 aggaagagagaataaaagtataacgagagtataatagagagttgtcacaa-aagttattgaaaattgaatgtcaaaatatcattcttc 280  Q
    ||||||||| ||||||| ||||| |||||||| | ||||||||||| | | ||||| |||||||||| ||||||||||||||||||||    
T  48872674 aggaagagaaaataaaaatataatgagagtatgaaagagagttgtctctataagttgttgaaaattggatgtcaaaatatcattcttc 48872587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 46040050 - 46039918
Alignment:
Q  137 tttagggacaatcttttt-cctctattcttattggatgataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtataatagag- 232  Q
    ||||| |||||||||||| ||||| |||||||| ||| |||||||||||||||||||||| |  ||||||||||||| || || |||||||| | ||||     
T  46040050 tttagtgacaatcttttttcctctcttcttattagataataacaatagagaaagaaaaagaaagagagagaataaaaatacaatgagagtatgagagaga 46039951  T
Q  233 -agttgtcacaaaagttattgaaaattgaatgt 264  Q
     | || ||||||||||| || |||| |||||||    
T  46039950 aatttatcacaaaagttgtttaaaaatgaatgt 46039918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 16583000 - 16583128
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga--ataaaagtataacgagagtataatagaga--gttgtcacaaaa 245  Q
    |||||||||| |||||||||||  |||| ||||||||  ||||||| |||| |||  ||||||||| || |||||||||| |||||  ||||||||||||    
T  16583000 tttttcctctcttcttattggacaataataatagaga--gaaaaagaaagaaagaggataaaagtacaatgagagtataagagagaaagttgtcacaaaa 16583097  T
Q  246 gttattgaaaattgaatgtcaaaatatcatt 276  Q
    |||||| |||| ||| |||  ||||||||||    
T  16583098 gttatttaaaagtgattgttcaaatatcatt 16583128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 35414468 - 35414549
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    |||||||||||||||||||||||| || ||||||    |||||  ||||||||||||||||||||||  |||||||||||||    
T  35414468 aatgatattttgacatccaattttaaataactttggatgacaacttttttcctctattcttattggacaataacaatagaga 35414549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 46859609 - 46859528
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    |||||||||| |||| ||||||| ||||||||||||| |||| |||||||||||| || ||||| ||  |||||||||||||    
T  46859609 aatgatatttagacaaccaatttccaacaacttttagtgacagtctttttcctctctttttattagacaataacaatagaga 46859528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 42824623 - 42824525
Alignment:
Q  112 ttttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagagaataaaa 210  Q
    ||||||||  ||||||| |||||||||  | |||||  ||||| |||| |||||||||||| ||| ||||||||| ||||| |||||||||||| ||||    
T  42824623 ttttgacaaacaattttaaacaactttatgtgacaactttttttctcttttcttattggataatatcaatagagagagaaataggaagagagaaaaaaa 42824525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 27260774 - 27260739
Alignment:
Q  105 aatgatattttgacatccaattttcaacaactttta 140  Q
    ||||||||||||||||||||||||||||||||||||    
T  27260774 aatgatattttgacatccaattttcaacaactttta 27260739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 4604790 - 4604724
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattgga 171  Q
    ||||||||||||||| |||||||  ||||||||||||||||||  ||||| ||  ||||||||||||    
T  4604790 aatgatattttgacaaccaatttaaaacaacttttagggacaactttttttcttcattcttattgga 4604724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 38289571 - 38289621
Alignment:
Q  97 ttaagaaaaatgatattttgacatccaattttcaacaacttttagggacaa 147  Q
    |||||| |||||||||||| ||||||||||||||||| |||||| ||||||    
T  38289571 ttaagagaaatgatattttaacatccaattttcaacagcttttaaggacaa 38289621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 48872591 - 48872633
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaa 147  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  48872591 aatgatattttgacatccaattttcaacaacttatagagacaa 48872633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 25302609 - 25302658
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataaaagtataacgagagtat 225  Q
    ||||||||||| ||||||||||||||||||||| ||||||| | ||||||    
T  25302609 aacaatagagagagaaaaaggaagagagaataagagtataatgtgagtat 25302658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 49660146 - 49660065
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    ||||||||||||||||||||||   |||||||||  | |||||  ||||||||||||||||||| ||  || ||||||||||    
T  49660146 aatgatattttgacatccaattccaaacaactttgggtgacaacttttttcctctattcttattagacaattacaatagaga 49660065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 49804874 - 49804927
Alignment:
Q  151 ttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||| || ||||||||| | ||||||||||||||||| | |||||||||    
T  49804874 ttttcctctctttttattggataaaaacaatagagaaagaaagaagaagagaga 49804927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 702424 - 702495
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaag--gaagagagaataaaagtataacga 219  Q
    |||||||||  |||||||||||  |||||||||||||  |||||||  |||||| |||||||| ||||||||    
T  702424 tttttcctcctttcttattggacaataacaatagagagggaaaaagaagaagagggaataaaaatataacga 702495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 8905832 - 8905793
Alignment:
Q  179 aatagagaaagaaaaaggaagagag--aataaaagtataa 216  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  8905832 aatagagaaagaaaaaggaagagagaaaataaaagtataa 8905793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 11121588 - 11121560
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||||||||||||||||    
T  11121588 aacaatagagaaagaaaaaggaagagaga 11121560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 48872765 - 48872801
Alignment:
Q  244 aagttattgaaaattgaatgtcaaaatatcattcttc 280  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  48872765 aagttattgaaaattggatgtcaatatatcattcttc 48872801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 105 - 277
Target Start/End: Complemental strand, 33085338 - 33085166
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||| || |||||||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||    
T  33085338 aatgatattttgatattcaattttcaataacttttatggacaatctttttcctttatttttattggatgataacaatagagagagaaaaaggaaaagaga 33085239  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcattc 277  Q
    ||||||||||||  ||||||||| |||||| |||||||||||||||||||||||  |||| ||||||||||||    
T  33085238 ataaaagtataataagagtataaaagagagctgtcacaaaagttattgaaaattagatgttaaaatatcattc 33085166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 107 - 279
Target Start/End: Complemental strand, 50645602 - 50645431
Alignment:
Q  107 tgatattttga-catccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagagaa 205  Q
    ||||||||||| |||||||||||||||||||||||| |||||  ||||| ||||||||||||||||| ||||||||||||  ||||||| |||||||  |    
T  50645602 tgatattttgaacatccaattttcaacaacttttagagacaactttttttctctattcttattggataataacaatagag--agaaaaaagaagaga-ta 50645506  T
Q  206 taaaagtataacgagagtataatagagagttg-tcacaaaagttattgaaaattgaatgtcaaaatatcattctt 279  Q
    ||||||||||| |||||||| | ||||| ||| ||  ||||||| ||||||||||||||||||||||||||||||    
T  50645505 taaaagtataatgagagtatgaaagagaattgttcttaaaagttgttgaaaattgaatgtcaaaatatcattctt 50645431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 25467973 - 25467847
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||              ||||||||    
T  25467973 aatgatattttgacatgcaattttcaacaacttttagggataattttttttctctattcttattggatgataacaata--------------aagagaga 25467888  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaa 245  Q
    |||||||||||| |||||||||| |||||||||||| ||||    
T  25467887 ataaaagtataatgagagtataaaagagagttgtcataaaa 25467847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 23719399 - 23719546
Alignment:
Q  91 atttagttaagaaaaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaaga 190  Q
    ||||||||||||  ||||||||||||||| |||||||  ||||||||| |  ||||| |||||||| |  |||||||| ||  ||||||||||||| | |    
T  23719399 atttagttaagaggaatgatattttgacaaccaatttgaaacaactttgaatgacaacctttttccgcctttcttattcgacaataacaatagagagaaa 23719498  T
Q  191 aaaaggaagagag--aataaaagtataacgagagtataatagagagtt 236  Q
    || ||||||||||  ||||||||||||| |||| ||| | ||||||||    
T  23719499 aagaggaagagagaaaataaaagtataatgagaatatgagagagagtt 23719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 54342961 - 54342839
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    |||||||| |||||| |||||||| |||||||||  | ||||| ||| ||||||  |||||||||||  ||||||||| | | ||||||| ||  |||||    
T  54342961 aatgatatcttgacaaccaattttaaacaactttgggtgacaaccttgttcctcctttcttattggacaataacaatacaaagagaaaaaagaagagaga 54342862  T
Q  203 gaataaaagtataacgagagtat 225  Q
    |||||||||||||| ||||||||    
T  54342861 gaataaaagtataatgagagtat 54342839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 51734556 - 51734672
Alignment:
Q  137 tttagggacaatctttttc-ctctattcttattggatgataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtataatagag- 232  Q
    ||||| ||||||||||||  |||| |||||||||||  ||||||||||||| |||||||| |  |||||||||||||||| || |||||||| | ||||     
T  51734556 tttagtgacaatctttttttctctcttcttattggacaataacaatagagagagaaaaagaaagagagagaataaaagtacaatgagagtatgagagaga 51734655  T
Q  233 -agttgtcacaaaagtt 248  Q
     ||||||||||||||||    
T  51734656 aagttgtcacaaaagtt 51734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 54128225 - 54128172
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctc 158  Q
    ||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||    
T  54128225 aatgatattttgacaaccaattttaaacaacttttagtgacaacctttttcctc 54128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 33085304 - 33085342
Alignment:
Q  242 aaaagttattgaaaattgaatgtcaaaatatcattcttc 280  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  33085304 aaaagttattgaaaattgaatatcaaaatatcattcttc 33085342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 54128135 - 54128085
Alignment:
Q  198 agagagaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    |||||||||||||||| || |||||||| | ||||||||||||||||||||    
T  54128135 agagagaataaaagtacaatgagagtatgagagagagttgtcacaaaagtt 54128085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 50645434 - 50645469
Alignment:
Q  105 aatgatattttgacatccaattttcaacaactttta 140  Q
    |||||||||||||||| |||||||||||||||||||    
T  50645434 aatgatattttgacattcaattttcaacaactttta 50645469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 54909471 - 54909358
Alignment:
Q  137 tttagggacaatcttt-ttcctctattcttattggatgataacaatagagaaagaaaaaggaagagag--aataaaagtataacgagagtat--aataga 231  Q
    ||||||||||| |||| ||||||| || | ||||||  ||||||||||||| |||||||| |||||||  |||||||||| || | ||||||  || |||    
T  54909471 tttagggacaacctttattcctctcttttcattggacaataacaatagagagagaaaaagaaagagagaaaataaaagtaaaatgtgagtatgaaagaga 54909372  T
Q  232 gagttgtcacaaaa 245  Q
     |||||||||||||    
T  54909371 aagttgtcacaaaa 54909358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 3698474 - 3698342
Alignment:
Q  123 aattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga--ataaaagtataacgag 220  Q
    ||||| |||||| |||||| |||||  |||||||||| || ||||||||  ||||||||| |   ||||||| |||||||||  ||||||||| ||  ||    
T  3698474 aatttccaacaatttttagtgacaacttttttcctctctttttattggacaataacaataaaaggagaaaaaagaagagagagaataaaagtacaataag 3698375  T
Q  221 agtataatagagag--ttgtcacaaaagttatt 251  Q
    ||||| | ||||||  |||||||||| ||||||    
T  3698374 agtatgagagagagagttgtcacaaatgttatt 3698342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 4272460 - 4272502
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaa 147  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||    
T  4272460 aatgatattttgacaaccaatttccaacaacttttagtgacaa 4272502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 7146069 - 7146134
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaaggaagag--agaataaaagta 213  Q
    |||||||||| || ||||||||  ||||||||||||| |||||||| |||||  ||||||||||||    
T  7146069 tttttcctctctttttattggacaataacaatagagagagaaaaagaaagagagagaataaaagta 7146134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 25467939 - 25467980
Alignment:
Q  242 aaaagttattgaaaattgaatgtcaaaatatcattcttcttt 283  Q
    ||||||| |||||||||| ||||||||||||||||| |||||    
T  25467939 aaaagttgttgaaaattgcatgtcaaaatatcattcgtcttt 25467980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 28982533 - 28982706
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| || ||||||||  |||| ||||| || ||||||||||  |||||    
T  28982533 aatgatattttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattggacaataataatagggagagaaaaaggaagagaga 28982632  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    ||||||||||| || |||||||| | |||||||||||||||||||| || |||| || ||||  ||||||||||    
T  28982633 gaataaaagtacaatgagagtatgagagagagttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 28982706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 34383750 - 34383925
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagg--aagaga 202  Q
    |||||||||||||||||||||||  |||||||||||| ||||| | ||||||||| || ||||||||  ||||||||||||| |||||||||  ||||||    
T  34383750 aatgatattttgacatccaatttctaacaacttttagtgacaacccttttcctctctttttattggacaataacaatagagagagaaaaaggaaaagaga 34383849  T
Q  203 gaataaaagtataacgagagtataatagaga--gttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
     ||||||| || || || ||||| | |||||  |||||||||||| || || |||| |||||||  ||||||||||    
T  34383850 taataaaaatacaatgaaagtatgagagagagggttgtcacaaaaattgttaaaaaatgaatgttcaaatatcatt 34383925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 354450 - 354308
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||| ||||||| |||||||||||| ||| ||| |||||||||| || ||||||||  ||||||||||||| ||||| |   |||||||    
T  354450 aatgatattttgacaaccaatttccaacaacttttaaggataatttttttcctctctt-ttattggacaataacaatagagagagaaagaaagagagaga 354352  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    ||||||| | ||  ||||||| | ||||||||||||||||||||    
T  354351 ataaaagaacaataagagtatgagagagagttgtcacaaaagtt 354308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 5456742 - 5456917
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga----aga 200  Q
    ||||||||||||||| ||||||| ||||||||||||| || ||  ||||| | || || ||||||||  ||||||||||||| ||||||| ||    |||    
T  5456742 aatgatattttgacaaccaatttccaacaacttttagtgataacattttttcgctctttttattggacaataacaatagagagagaaaaaagaagagaga 5456841  T
Q  201 gagaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    ||||||||||||||||  | | ||| | |||||||||||||||||||| || |||| |||||||  ||||||||||    
T  5456842 gagaataaaagtataataaaaatatgagagagagttgtcacaaaagttgttaaaaaatgaatgttcaaatatcatt 5456917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 2204312 - 2204442
Alignment:
Q  122 caattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaaga--gagaataaaagtataacga 219  Q
    |||||| ||||||||||||| ||||| ||||||||||| || ||||||||  |||| |||||||| ||| |||||||||  ||||||||||||| || ||    
T  2204312 caatttccaacaacttttagtgacaacctttttcctctctttttattggacaataataatagagagagagaaaggaagagggagaataaaagtacaatga 2204411  T
Q  220 gagtat--aatagagagttgtcacaaaagtt 248  Q
     | |||   | ||||||||||||||||||||    
T  2204412 aattatgagagagagagttgtcacaaaagtt 2204442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 10729750 - 10729600
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattgg---atgataacaatagagaaagaaaaagga---- 197  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||| || ||| |||   || | ||||||||||| |||||||  |        
T  10729750 aatgatattttgacaaccaatttccaacaacttttagtgacaacctttttcctctctttttactggacaataacaacaatagagagagaaaaaaaagaag 10729651  T
Q  198 agagagaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    ||||||||||||| || || || ||||| | || |||||||||||||||||    
T  10729650 agagagaataaaaatacaatgaaagtatgagagtgagttgtcacaaaagtt 10729600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 23632585 - 23632676
Alignment:
Q  161 ttcttattggatgataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtat--aatagagagttgtcacaaaagtt 248  Q
    |||||||||||  ||||||||||||| |||||||| |  |||||||||||||||| || ||||||||   ||||| || |||||||||||||    
T  23632585 ttcttattggacaataacaatagagagagaaaaagtaagagagagaataaaagtacaatgagagtatgagatagaaaggtgtcacaaaagtt 23632676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 11742948 - 11742997
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataaaagtataacgagagtat 225  Q
    ||||||||||| ||||||||||||||||| ||||| ||||| | ||||||    
T  11742948 aacaatagagagagaaaaaggaagagagagtaaaaatataatgtgagtat 11742997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 41830934 - 41831017
Alignment:
Q  17 aatactatgcatgtaagctaataaaaaaccttcagatatggagtgtatttaactccaagtccttttgttagcttatttagttaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41830934 aatactttgcatgtaagctaataaaaaaccttcagatatggagtgtctttaactccaagtccttttgttagcttatttagttaa 41831017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 41317376 - 41317265
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagag--a 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |  || |||||||||| ||||||||||||||  |    
T  41317376 aatgatattttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattgaacaatgacaatagagagagaaaaaggaagagcaa 41317277  T
Q  203 gaataaaagtat 214  Q
    ||||||||||||    
T  41317276 gaataaaagtat 41317265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 4969426 - 4969600
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaa-tctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agag 201  Q
    |||||||||||||||||||||||  |||||||||    ||||| | |||||||| |||||||||||||  ||||||||||||| ||||||| ||  ||||    
T  4969426 aatgatattttgacatccaatttcaaacaactttggatgacaactttttttcctttattcttattggacaataacaatagagagagaaaaaagaagagag 4969525  T
Q  202 agaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcattc 277  Q
    |||||||||||| || | |||||| | ||||||||||||| |||||| || |||| ||  ||||||||||||||||    
T  4969526 agaataaaagtacaatgtgagtatgagagagagttgtcaccaaagttgtt-aaaaatggttgtcaaaatatcattc 4969600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 40210005 - 40210115
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaaggaag--agagaataaaagtataacgagagtataatagag--agttgtcacaaaa 245  Q
    |||||||||| |||||||||||  ||||||||||||| |||||||| |||  ||||||||||||||||| | |||||| | ||||  |||||||||||||    
T  40210005 tttttcctctcttcttattggacaataacaatagagagagaaaaagaaagaaagagaataaaagtataatgtgagtatgagagagaaagttgtcacaaaa 40210104  T
Q  246 gttattgaaaa 256  Q
     ||||| ||||    
T  40210105 attatttaaaa 40210115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 41831023 - 41831063
Alignment:
Q  291 atatccagggactcccaaacaatatacataaaaaatataat 331  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41831023 atatccagggactcccaaacaatatacataaaaaatataat 41831063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 36193618 - 36193717
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||| ||||||||  ||||||||     | ||||||||||||| ||||||||||||  ||| ||||||||| ||||||| |||||||||    
T  36193618 aatgatattttgacaaccaattttagacaactttggattataatctttttcctccattcttattggacaatagcaatagagagagaaaaatgaagagaga 36193717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 15260484 - 15260339
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagag- 203  Q
    ||||||||||| ||| |||||||| || || ||||||||| ||||||||| ||   || ||||||||  |||| |||||||  ||| ||||||||||||     
T  15260484 aatgatattttaacaaccaattttaaataatttttagggataatcttttttcttcctttttattggacaataataatagag--agagaaaggaagagaga 15260387  T
Q  204 -aataaaagtataacgagagtat--aatagagagttgtcacaaaagtt 248  Q
     ||||||||||||| ||| ||||   | ||||||||||||||||||||    
T  15260386 aaataaaagtataatgagtgtatgagagagagagttgtcacaaaagtt 15260339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 4285581 - 4285507
Alignment:
Q  202 agaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    |||||||||||| || |||||||| | ||||||||||| ||||| ||||| |||| ||| ||| |||||||||||    
T  4285581 agaataaaagtacaatgagagtatgagagagagttgtcccaaaaattatttaaaaatgactgttaaaatatcatt 4285507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 41317213 - 41317255
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaa 147  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  41317213 aatgatattttgacatcaaattttcaacaatttttagggacaa 41317255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 280
Target Start/End: Original strand, 36003456 - 36003634
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagag--a 202  Q
    ||||||||||||||||  |||||  || || |||  | |||||  ||||| ||| |||||||||| |  ||||||||||| | ||||||| ||||||  |    
T  36003456 aatgatattttgacatttaatttcaaataattttgggtgacaactttttttctccattcttattgaacaataacaatagaaagagaaaaaagaagagaaa 36003555  T
Q  203 gaataaaagtataacgagagtataatagag--agttgtcacaaaagttattgaaaattgaatgtcaaaatatcattcttc 280  Q
    |||||||||||  | |||| ||| ||||||  ||||||||| ||| || || |||| ||| |||||||||||||||||||    
T  36003556 gaataaaagtacgatgagaatatgatagagaaagttgtcaccaaaattgtt-aaaaatgattgtcaaaatatcattcttc 36003634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 7438745 - 7438600
Alignment:
Q  107 tgatattttgacatccaattttcaacaacttttagggacaatctttttc-ctctattcttattggatgataacaatagagaaaga-aaaaggaa---gag 201  Q
    ||||||||||||| ||||  |  ||||||||| |||||||| ||||||  |||| || | ||||||  ||||||||||||||||| ||||||||   |||    
T  7438745 tgatattttgacaaccaaaataaaacaacttt-agggacaacctttttttctctcttttcattggacaataacaatagagaaagagaaaaggaaagagag 7438647  T
Q  202 agaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
     ||||||||||| || | |||||| | |||||||||||| |||||||    
T  7438646 ggaataaaagtagaatgtgagtatgagagagagttgtcataaaagtt 7438600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 37468211 - 37468297
Alignment:
Q  162 tcttattggatgataacaatagagaaagaaaaaggaagag--agaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    ||||||||||  ||||||||||||| ||||| | | ||||  |||||||||||| || |||||||| |  |||||||||||||||||||    
T  37468211 tcttattggacaataacaatagagagagaaagaaggagaggtagaataaaagtacaatgagagtatga--gagagttgtcacaaaagtt 37468297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 49875972 - 49875800
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||| || | ||||||  ||||||||||||| ||||||| |||||||||    
T  49875972 aatgatattttgacaaccaatttccaacaacttttagtgacaat-tttttcctctcttttcattggacaataacaatagagagagaaaaatgaagagaga 49875874  T
Q  205 --ataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
      ||||||||| ||  ||||||| | |||||||||||||||||||| || |||| || |||| |||||||||||    
T  49875873 gaataaaagtacaataagagtatgagagagagttgtcacaaaagttgttaaaaaatggatgttaaaatatcatt 49875800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 276
Target Start/End: Original strand, 31350498 - 31350673
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagaga-- 202  Q
    ||||||||||||||| ||||||| ||||||||||||| |||||  ||||| |||| || ||||||||  ||||||||| ||| |||||||||||||||      
T  31350498 aatgatattttgacaaccaatttccaacaacttttagtgacaactttttttctctctttttattggacaataacaatatagagagaaaaaggaagagagt 31350597  T
Q  203 gaataaaagtataacgagagtat--aatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    ||||||||||| ||| |||||||   | ||||||||||||||||| || || |||| || |||| |||||||||||    
T  31350598 gaataaaagtacaacaagagtatgagagagagagttgtcacaaaaattgttaaaaaatggatgttaaaatatcatt 31350673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 43898742 - 43898588
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||| | | |||| ||||||||| |  |||||  ||||| || | |||||||||||  ||||||||||||| | |||||| |||||  |    
T  43898742 aatgatattttgacaacaatttttaaacaactttcattgacaactttttttctatcttcttattggacaataacaatagagagaaaaaaagaaagaggaa 43898643  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattg 259  Q
    |||||||||||| |||||||| | |||||||||||||||||||| || |||||||    
T  43898642 ataaaagtataatgagagtatgagagagagttgtcacaaaagttgtttaaaattg 43898588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 256
Target Start/End: Original strand, 46114255 - 46114406
Alignment:
Q  107 tgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagag--a 204  Q
    |||||||||||||  |||||| ||||||||||| | ||||| ||||||||||| ||  ||||| |  ||||||||||||| ||||||| ||||||||  |    
T  46114255 tgatattttgacaatcaatttccaacaacttttggtgacaacctttttcctctctttctattgaacaataacaatagagagagaaaaaagaagagagaaa 46114354  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaa 256  Q
    ||||||||| || |||| ||||| |||||||||||| |||| || |||||||    
T  46114355 ataaaagtacaatgagaatataagagagagttgtcataaaaattgttgaaaa 46114406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 257
Target Start/End: Complemental strand, 50886369 - 50886215
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    |||||||||||||||  ||||||||||||||||| || |||||  |||||||||  || ||||||||  ||||||||||||| ||||||||||  |||||    
T  50886369 aatgatattttgacaatcaattttcaacaactttcagtgacaacgtttttcctc--tttttattggacaataacaatagagagagaaaaaggaagagaga 50886272  T
Q  203 gaataaaagtataacgagagtataatagaga--gttgtcacaaaagttattgaaaat 257  Q
    |||||||| || || |||||||| | |||||  ||||||||||||||| || |||||    
T  50886271 gaataaaaatacaatgagagtatgagagagagtgttgtcacaaaagttgttaaaaat 50886215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 31425709 - 31425538
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||| | ||||||||| || |||||  ||||| ||||||||||| || ||||||||  ||||||||||||| | ||| |   |||||||    
T  31425709 aatgatattttgacaactaattttcaataatttttaatgacaacctttttcctctctttttattggacaataacaatagagagaaaaagaaagagagaga 31425610  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    ||||||||| || |||||||| | |||   |||||||||||||| || |||| || ||||  ||||||||||    
T  31425609 ataaaagtacaatgagagtatgagagatgattgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 31425538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 33976286 - 33976383
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagaga 202  Q
    ||||||||||||||||  |||||||||||| |||||| |||||   ||||||||| || ||||||||| ||||||||||||| ||||||| |||||||    
T  33976286 aatgatattttgacatttaattttcaacaatttttagtgacaacacttttcctctctttttattggataataacaatagagagagaaaaatgaagaga 33976383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 50886573 - 50886436
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaat--agagaaagaaaaaggaagaga 202  Q
    ||||||||||||||| ||||||||  ||||||||  | ||||| |||||||||| ||||||||||||  ||| ||||  |||||||||||||||||||||    
T  50886573 aatgatattttgacaaccaattttagacaactttgggtgacaacctttttcctccattcttattggacaatagcaatagagagaaagaaaaaggaagaga 50886474  T
Q  203 ga-ataaaagtataacgagagtataatagagagttgtcac 241  Q
    || |  ||||||||| ||||||||   |||||||||||||    
T  50886473 gagaataaagtataatgagagtat--gagagagttgtcac 50886436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 15927487 - 15927634
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||||||| ||||||| ||| || |||||| |||||  ||||| | || || ||||||||  |||||||||| || ||||||||||  |||||    
T  15927487 aatgatattttgacaaccaatttccaataatttttagtgacaactttttttcgctctttttattggacaataacaatagtgagagaaaaaggaagagaga 15927586  T
Q  203 gaataaaagtataacgagagtat--aatagagagttgtcacaaaagtt 248  Q
    ||||||||||| || ||||||||   | |||||||||| |||||||||    
T  15927587 gaataaaagtacaatgagagtatgagagagagagttgttacaaaagtt 15927634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 47479159 - 47479012
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    |||||||||||||||  ||||||| ||||| ||||||||||||| ||||| ||   ||||| || ||  |||| |||||||||||||||||||  |||||    
T  47479159 aatgatattttgacaatcaattttaaacaatttttagggacaattttttttcttccttcttctttgacaataataatagagaaagaaaaaggaagagaga 47479060  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagttat 250  Q
    |||||||| |||||  |  |||| | | ||||||||||||||| ||||    
T  47479059 gaataaaaatataataaatgtatgagaaagagttgtcacaaaaattat 47479012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 40367742 - 40367674
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaaggaagag--agaataaaagtataa 216  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||| |||||  |||||||||||||||    
T  40367742 tttttcctctcttcttattggataataacaatagagagagaaaaagaaagagacagaataaaagtataa 40367674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 4617855 - 4617758
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||||||||||  ||||| |||    |||| | ||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||    
T  4617855 aatgatattttgacatccaatttcaaacaattttggatgacagtttttttcctctatttttattggacaataacaatagagaa--aaaaaggaagagaga 4617758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 192
Target Start/End: Complemental strand, 34608278 - 34608191
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaa 192  Q
    |||||||||||||||   |||||| ||||||||||||||| ||||||||| ||   |||||||||||| |||| |||||||| |||||    
T  34608278 aatgatattttgacaattaattttaaacaacttttagggataatcttttttcttccttcttattggataataataatagagagagaaa 34608191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 35987090 - 35986949
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagg--aagaga 202  Q
    ||||||||||||||| ||||||||||||||||||||  || || |||||| || | || ||||| ||  |||| |||| ||| |||||||||  ||||||    
T  35987090 aatgatattttgacaaccaattttcaacaacttttaatgataaacttttttctttttttttattagacaataataata-agagagaaaaaggaaaagaga 35986992  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaa 245  Q
    | ||||||||| || || | ||| | |||||||||||||||||    
T  35986991 ggataaaagtacaatgaaaatatgagagagagttgtcacaaaa 35986949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 37143280 - 37143201
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    ||||||||||||||| | ||||| ||||||||||||| ||||| ||||||||||  || ||||||||  |||||||||||||    
T  37143280 aatgatattttgacaactaatttccaacaacttttagtgacaacctttttcctc--tttttattggacaataacaatagaga 37143201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 23553552 - 23553628
Alignment:
Q  174 ataacaatagagaaagaaaaaggaagag--agaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    ||||||||||||| |||||||| |||||  |||||||||||| ||  ||||||| | ||||||||||||||||||||    
T  23553552 ataacaatagagagagaaaaagaaagagagagaataaaagtacaataagagtatgagagagagttgtcacaaaagtt 23553628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 31930927 - 31931008
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    ||||||||||||||| ||||||| |||||| |||||| || || ||||||||||| || | ||||||  |||||||||||||    
T  31930927 aatgatattttgacaaccaatttccaacaaattttagtgataacctttttcctctcttttcattggagaataacaatagaga 31931008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 38017859 - 38017918
Alignment:
Q  151 ttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagagaataaaa 210  Q
    |||| |||| |||||||||||| | ||||||||||||||||| | |||||||||||||||    
T  38017859 tttttctctcttcttattggataaaaacaatagagaaagaaagaagaagagagaataaaa 38017918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 31664786 - 31664732
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctct 159  Q
    ||||||||||||||| ||||||| ||||||||||||| || || |||||||||||    
T  31664786 aatgatattttgacaaccaatttccaacaacttttagtgataacctttttcctct 31664732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 33389141 - 33389043
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtataatagag--agttgtcacaaaa 245  Q
    |||||||||| |||||||||||| |||| |||| ||| |||||| | |  ||||||||||||||||||| |||||||| | ||||  |||||||||||||    
T  33389141 tttttcctctcttcttattggataataa-aatatagagagaaaaggaatgagagagaataaaagtataatgagagtatgagagagaaagttgtcacaaaa 33389043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 45292966 - 45293068
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtataatagag--agttgtcacaaaa 245  Q
    |||||||||| |||||||||||  |||| ||| |||| |||||||| |  ||||||||||||| ||||| | |||||| | ||||  |||||||||||||    
T  45292966 tttttcctcttttcttattggacaataagaatggagagagaaaaagaaagagagagaataaaaatataatgtgagtatgagagagaaagttgtcacaaaa 45293065  T
Q  246 gtt 248  Q
    |||    
T  45293066 gtt 45293068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 19962055 - 19961989
Alignment:
Q  161 ttcttattggatgataacaatagagaaagaaaaaggaaga--gagaataaaagtataacgagagtat 225  Q
    |||||||||||  |||| |||||||| |||||||||||||  |||||||||||||||| ||| ||||    
T  19962055 ttcttattggacaataataatagagagagaaaaaggaagagagagaataaaagtataatgagtgtat 19961989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 37143205 - 37143125
Alignment:
Q  198 agagagaataaaagtataacgagagtataatagaga--gttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    |||||||||||||||| || |||||||| | |||||  ||||||||||||||| || |||| || ||||  ||||||||||    
T  37143205 agagagaataaaagtacaatgagagtatgagagagagggttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 37143125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 38910537 - 38910573
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagaga 186  Q
    ||||||||||||||||||||||| | |||||||||||    
T  38910537 tttttcctctattcttattggataaaaacaatagaga 38910573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 41610494 - 41610406
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaa 193  Q
    ||||||||||||||  | |||||| |||||||| ||| |||||  ||||| |||| || ||||| ||  ||||||||||||| ||||||    
T  41610494 aatgatattttgactacaaattttaaacaacttctagtgacaacattttttctctctttttattagacaataacaatagagagagaaaa 41610406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 2819432 - 2819257
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaag--aga 202  Q
    ||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||| || ||||||||  ||||||||||||| ||||||| ||||  |||    
T  2819432 aatgatattttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattggacaataacaatagagacagaaaaacgaagataga 2819333  T
Q  203 gaataaaagtataacgagagtataatagaga--gttgtcacaaaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    ||||||||||| || |||| ||| | |||||  ||||||| ||||||| || |||| || ||||  ||||||||||    
T  2819332 gaataaaagtacaatgagaatatgagagagatggttgtcataaaagttgttaaaaaatggatgttcaaatatcatt 2819257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 11778757 - 11778611
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||||| ||   |||||||||||  |||| |||||||| ||||||| ||  |||||    
T  11778757 aatgatattttgacaaccaattttaaacaacttttagggacaattttttttcttccttcttattggacaataataatagagagagaaaaatgaagagaga 11778658  T
Q  203 gaataaaagtataacgaga-gtataatagagagttgtcacaaaagtt 248  Q
    |||||||||||||| || |  ||| | ||||||||||||||||||||    
T  11778657 gaataaaagtataatgaaatatatgagagagagttgtcacaaaagtt 11778611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 17117050 - 17117194
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    ||||||||||||||| ||||||||  |||| |||  | ||||| |||||||||| ||||||| ||||  ||| |||||||||  ||||||||||||||||    
T  17117050 aatgatattttgacaaccaattttagacaattttgggtgacaacctttttcctccattcttactggacaatagcaatagagagtgaaaaaggaagagaga 17117149  T
Q  205 -ataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
     | |||||||||| || | ||| | ||||||||||||| ||||||    
T  17117150 gaaaaaagtataatgataatatgagagagagttgtcaccaaagtt 17117194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 12651214 - 12651327
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||||||| ||||||| ||||||||||| | |||||  |||||||||| ||  |||||||  ||||||||||||| |||||||  |  |||||    
T  12651214 aatgatattttgacaaccaatttccaacaacttttggtgacaacttttttcctctttttctattggacaataacaatagagagagaaaaataaagagaga 12651313  T
Q  203 gaataaaagtataa 216  Q
    ||||||||||||||    
T  12651314 gaataaaagtataa 12651327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 19223625 - 19223544
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    |||||||||||||||  |||||||||| || |||||  |||||| |||||||||| || ||||||||  |||||||||||||    
T  19223625 aatgatattttgacaatcaattttcaataatttttaatgacaatttttttcctctctttttattggacaataacaatagaga 19223544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 48814742 - 48814875
Alignment:
Q  149 ctttttcctctattcttattggatgataacaatagagaaagaaaaaggaaga--gagaataaaagt--ataacgagagtataatagaga--gttgtcaca 242  Q
    |||||| |||| || ||||||||  ||||||||||||| |||||||||||||  ||||||||||||  | ||  ||||||| | |||||  |||||||||    
T  48814742 cttttttctctttttttattggacaataacaatagagagagaaaaaggaagagggagaataaaagtaaaaaataagagtatgagagagagggttgtcaca 48814841  T
Q  243 aaagttattgaaaattgaatgtcaaaatatcatt 276  Q
    |||||| || |||| |||||||  ||||||||||    
T  48814842 aaagttgttaaaaaatgaatgttcaaatatcatt 48814875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 28565952 - 28566084
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||  ||||||| |||||||||  | ||||| | ||||||||  || ||||||||| |||| ||||||||| |  |||| |||||| |    
T  28565952 aatgatattttgacaatcaattttaaacaactttgggagacaa-ccttttcctccttttttattggataataaaaatagagaatg--aaagtaagagaaa 28566048  T
Q  205 ataaaagtataacgagagtataatagagagttgtca 240  Q
    |||||| || || |||||  || |||||||||||||    
T  28566049 ataaaaatacaaggagagagtattagagagttgtca 28566084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 44255788 - 44255838
Alignment:
Q  104 aaatgatattttgacatccaattttcaacaacttttagggacaatcttttt 154  Q
    ||||||||||||||||  ||||||| || ||||||||||||||| ||||||    
T  44255788 aaatgatattttgacaatcaattttaaataacttttagggacaaccttttt 44255838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 7990184 - 7990127
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataaaagtataacgagagtataatagaga 233  Q
    |||||| |||| ||||||| ||||||||||||| ||||||| | |||||||| |||||    
T  7990184 aacaatggagagagaaaaaagaagagagaataagagtataatgtgagtataagagaga 7990127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 13437303 - 13437271
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataa 208  Q
    ||||||||||||| |||||||||||||||||||    
T  13437303 aacaatagagaaacaaaaaggaagagagaataa 13437271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 29763937 - 29763909
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||||||||||||||||    
T  29763937 aacaatagagaaagaaaaaggaagagaga 29763909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 48639349 - 48639381
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataa 208  Q
    ||||||||||| |||||||||||||||||||||    
T  48639349 aacaatagagagagaaaaaggaagagagaataa 48639381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 1093 - 1203
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagag--a 202  Q
    ||||||||||||||| |||||||| |||||||||  | ||||| ||||||||||  |||||||||||  ||||||||||||| ||||||||||||||  |    
T  1093 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaatagagagagaaaaaggaagagaga 1192  T
Q  203 gaataaaagta 213  Q
    |||||||||||    
T  1193 gaataaaagta 1203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 12171977 - 12172114
Alignment:
Q  100 agaaaaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattctta-ttggatgataacaatagagaaagaaaaagga- 197  Q
    |||| ||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||  |||||| |||||  ||||||||||||| ||||||| ||     
T  12171977 agaagaatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaatagagagagaaaaatgaa 12172076  T
Q  198 -agagagaataaaagtataacgagagtataatagagag 234  Q
     |||||||||||||||| || |||||||| | ||||||    
T  12172077 gagagagaataaaagtacaatgagagtatgagagagag 12172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 12416405 - 12416542
Alignment:
Q  100 agaaaaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattctta-ttggatgataacaatagagaaagaaaaagga- 197  Q
    |||| ||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||  |||||| |||||  ||||||||||||| ||||||| ||     
T  12416405 agaagaatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaatagagagagaaaaatgaa 12416504  T
Q  198 -agagagaataaaagtataacgagagtataatagagag 234  Q
     |||||||||||||||| || |||||||| | ||||||    
T  12416505 gagagagaataaaagtacaatgagagtatgagagagag 12416542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 7612101 - 7612246
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||| ||   |||||||| ||  |||| |||||||| |||||||  |  |||||    
T  7612101 aatgatattttgacaaccaattttaaacaacttttagggacaatcttttttcttccttcttattagacaataataatagagagagaaaaataaagagaga 7612200  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagtt 248  Q
    |||||||| |||||  |  |||| | |||||||| |||||||||||    
T  7612201 gaataaaaatataataaatgtatgagagagagttatcacaaaagtt 7612246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 12946520 - 12946601
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||| ||||||| |||||| |  || ||||||||||    
T  12946520 aatgatattttgacatccaattttcaacaactttttgggacaactttttttctctatttttattgaacaatgacaatagaga 12946601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 40649636 - 40649562
Alignment:
Q  112 ttttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagaga 186  Q
    |||||||| |||||||||||||| |||||| ||||| |||||||||||||| ||||||||  ||| |||||||||    
T  40649636 ttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattggacaatagcaatagaga 40649562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 21514900 - 21515004
Alignment:
Q  174 ataacaatagagaaagaaaaagga--agagagaataaaagtataacgagagtataatagagagttgtcacaaaagttattgaaaattgaatgtcaaaata 271  Q
    ||||||||||||| ||||||||||  |||||||||||||||| || |||||||| | |||| |||||||||||| || || |||| || ||||  |||||    
T  21514900 ataacaatagagagagaaaaaggatgagagagaataaaagtacaatgagagtatgagagagggttgtcacaaaaattgttaaaaaatggatgttcaaata 21514999  T
Q  272 tcatt 276  Q
    |||||    
T  21515000 tcatt 21515004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 9306391 - 9306526
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagagaga 204  Q
    |||||||||||||||  ||||||  || || ||||||||| ||  ||||| ||  ||||||||||||  |||| ||||||||||  ||||||||||||||    
T  9306391 aatgatattttgacaatcaatttaaaataa-ttttagggataactttttttctacattcttattggacaataataatagagaaa--aaaaggaagagaga 9306487  T
Q  205 ataaaagtataacgagagtataatagagagttgtcacaa 243  Q
    |||||| ||| |  || |||| | |||||||||||||||    
T  9306488 ataaaaatattataagtgtatgaaagagagttgtcacaa 9306526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 12946720 - 12946678
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaa 147  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  12946720 aatgatattttgacatccaattttcaataatttttagggacaa 12946678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 31266171 - 31266307
Alignment:
Q  150 tttttcctctattcttattggatgataacaatagagaaagaaaaag--gaagagagaataaaagtataacgagagtataatagagag--ttgtcacaaaa 245  Q
    |||||||||| || ||||||||  ||||||||||||| ||||||||   ||||||||||||||||| || || ||||| | ||||||  || ||||||||    
T  31266171 tttttcctctctttttattggacaataacaatagagagagaaaaagaaaaagagagaataaaagtacaatgaaagtatgagagagagaattatcacaaaa 31266270  T
Q  246 gttattgaaaattgaatgtcaaaatatcattcttctt 282  Q
     || || |||| || ||||  |||||||||| |||||    
T  31266271 attgttaaaaaatggatgttcaaatatcatttttctt 31266307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 10309773 - 10309920
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagg--aagaga 202  Q
    |||||||||||||||  ||||||| ||||| |||  | || || |||||||||   || ||||||||  ||||||||| |||  ||||||||  ||||||    
T  10309773 aatgatattttgacaatcaattttaaacaattttgggtgataacctttttccttcttttttattggacaataacaataaagagggaaaaaggaaaagaga 10309872  T
Q  203 gaataaaagtataacgagagtataatagagagttgtcacaaaagttat 250  Q
    |||||||| ||||| || ||||| | ||||| ||||||| ||| ||||    
T  10309873 gaataaaaatataatgaaagtatgagagagaattgtcaccaaaattat 10309920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 7602995 - 7603067
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataaaagtataacgagagtataatagagagttgtcacaaaagttat 250  Q
    ||||||| |||| |||||| ||||||||||||| |  |||||| |||||||| |||||||||||| |||||||||    
T  7602995 aacaataaagaaggaaaaatgaagagagaataagaacataacgcgagtataa-agagagttgtca-aaaagttat 7603067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 12946686 - 12946724
Alignment:
Q  242 aaaagttattgaaaattgaatgtcaaaatatcattcttc 280  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  12946686 aaaaattattgaaaattggatgtcaaaatatcattcttc 12946724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 37792054 - 37792151
Alignment:
Q  104 aaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaagaga 202  Q
    |||||||||||| ||| | |||||| || || ||||||||||||  |||||| ||  |||||||| ||  |||| |||||||| |||||||||||||||    
T  37792054 aaatgatattttcacaactaattttaaataatttttagggacaacttttttcttcc-ttcttattagacaataataatagagagagaaaaaggaagaga 37792151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 12946554 - 12946513
Alignment:
Q  242 aaaagttattgaaaattgaatgtcaaaatatcattcttcttt 283  Q
    ||||||| |||||||||| ||||||||||||||||| |||||    
T  12946554 aaaagttgttgaaaattggatgtcaaaatatcattcatcttt 12946513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 36023267 - 36023136
Alignment:
Q  99 aagaaaaatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaaggaa 198  Q
    ||||| |||||||||||||||  ||||||| || || |||  | ||||||||||||||||  || | ||||||  ||||||  ||||||| || |||  |    
T  36023267 aagaagaatgatattttgacaatcaattttaaataattttgggtgacaatctttttcctcccttttaattggacaataaca--agagaaaaaagaag--a 36023172  T
Q  199 gagagaataaaagtataacgagagtataatagagag 234  Q
    |||| ||||||||||||| |||||||| | ||||||    
T  36023171 gagaaaataaaagtataatgagagtatgagagagag 36023136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 36023232 - 36023269
Alignment:
Q  247 ttattgaaaattgaatgtcaaaatatcattcttcttta 284  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  36023232 ttatttaaaattgattgtcaaaatatcattcttcttta 36023269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 44712605 - 44712490
Alignment:
Q  105 aatgatattttgacatccaattttcaacaacttttagggacaatctttttcctctattcttattggatgataacaatagagaaagaaaaagga--agaga 202  Q
    ||||||||||| | | ||||||||  ||||||||    ||||| |||||||||||||||||||||    ||| ||||||||| ||||||| ||  | |||    
T  44712605 aatgatattttaataaccaattttagacaactttggatgacaacctttttcctctattcttattgagcaatagcaatagagagagaaaaaagaataaaga 44712506  T
Q  203 gaataaaagtataacg 218  Q
    ||||||||||| ||||    
T  44712505 gaataaaagtacaacg 44712490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 677 - 749
Alignment:
Q  176 aacaatagagaaagaaaaaggaagagagaataaaagtataacgagagtataatagagagttgtcacaaaagttat 250  Q
    ||||||| |||| |||||| ||||||||||||| |  |||||| |||||||| |||||||||||| |||||||||    
T  677 aacaataaagaaggaaaaatgaagagagaataagaacataacgcgagtataa-agagagttgtca-aaaagttat 749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 6038 - 6122
Alignment:
Q  107 tgatattttgacatccaattttcaacaacttttagggacaatc-tttttcctctattcttattggatgataacaatagagaaagaa 191  Q
    ||||||||  |||||||||||| |||||| ||| | ||||| | |||||||||| |||||||||||| | ||||||||||| ||||    
T  6038 tgatatttgtacatccaattttaaacaacattt-gtgacaaccatttttcctctcttcttattggataaaaacaatagagagagaa 6122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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