View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_21 (Length: 316)
Name: NF6379_low_21
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 43850775 - 43850478
Alignment:
| Q |
4 |
ggaggagcagagaatgtttgtagagtcacgtgctggaattaaccgatgtttccaatcaacctaatgatgtccaaagtttagataattagctttacttttg |
103 |
Q |
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| T |
43850775 |
ggagcagcaaagaatgtttgtagagtcacctgctggaattaaccgatgtttccaatcaacctaatgatgtccaaagtttagataattagctttacttttg |
43850676 |
T |
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| Q |
104 |
atttcttagagttgggaatccaacaaccatgattctaaataaaagtctctaagtggaactgaatgtttgttaagtccaacatcaattcttgacaccaaag |
203 |
Q |
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| T |
43850675 |
atttcttagagttgggaatccaacaaccatgattctaaataaaagtctctaagtggaactgaaggtttgataagtccaacatcaattcttgacaccaaag |
43850576 |
T |
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| Q |
204 |
ctttaacctcatt---gaatccattctcaattaccaataggaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtctt |
298 |
Q |
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| T |
43850575 |
ctttaacctcattggagaatccattctcaattaccaataggaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtctt |
43850478 |
T |
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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 298
Target Start/End: Original strand, 31875780 - 31875937
Alignment:
| Q |
144 |
aaaagtctctaagtggaactgaatgtttgttaagtccaacatcaattcttgacaccaaagctttaacctcatt---gaatccattctcaattaccaatag |
240 |
Q |
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|||| ||||| | |||||||||| |||| ||||||||||||||| ||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
31875780 |
aaaaatctctcactggaactgaagctttgataagtccaacatcaactcttgacacaaaagcattaacctcatttgaaaatcctttctcaattaccaatag |
31875879 |
T |
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| Q |
241 |
gaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtctt |
298 |
Q |
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| T |
31875880 |
caacaaagtttgtagcactagggacaaagtagcttcaaaaaccattggtcttggtctt |
31875937 |
T |
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