View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_22 (Length: 316)
Name: NF6379_low_22
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 43617007 - 43616695
Alignment:
| Q |
1 |
taacctttaggaaaagaaattcaaatttcatgttgtaaaattgtcattactctcacttcaattaataattatttttctgttcactaaattttgttnnnnn |
100 |
Q |
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| T |
43617007 |
taacctttaggaaaagaaattcaaatttcatgttgtaaaattgtcattactctcacttcaattaataattatttttctgttcactaaattttgttaaaaa |
43616908 |
T |
|
| Q |
101 |
nnttatcgataacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttataccgcaaattgaaattaaattaatggtacctgaagta |
200 |
Q |
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| T |
43616907 |
aattatccatgacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttataccacaaattgaaattaaattaatggtacctgaagta |
43616808 |
T |
|
| Q |
201 |
caagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43616807 |
caagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattgtt |
43616708 |
T |
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| Q |
301 |
gtgatgatgtcca |
313 |
Q |
| |
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|||||||| |||| |
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| T |
43616707 |
gtgatgatatcca |
43616695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 176 - 313
Target Start/End: Complemental strand, 43610206 - 43610070
Alignment:
| Q |
176 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
275 |
Q |
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| T |
43610206 |
aattaaatta-tgctacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgatt |
43610108 |
T |
|
| Q |
276 |
catgatattcatgttcttgattgttgtgatgatgtcca |
313 |
Q |
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| T |
43610107 |
cactatcttcatgttgttgatagttgtgatgatatcca |
43610070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 176 - 313
Target Start/End: Complemental strand, 43603798 - 43603661
Alignment:
| Q |
176 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
275 |
Q |
| |
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|||||||| || |||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| |||| |||||||||||||||||| |||| ||||| |
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| T |
43603798 |
aattaaataaacggtacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgatt |
43603699 |
T |
|
| Q |
276 |
catgatattcatgttcttgattgttgtgatgatgtcca |
313 |
Q |
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| T |
43603698 |
cactatctttatgttgttgatagttgtgatgatatcca |
43603661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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