View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_23 (Length: 309)
Name: NF6379_low_23
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 42057556 - 42057288
Alignment:
| Q |
1 |
atatttagcatcacttaccttggtaatattttaagcagaattgtatattattgagtgtaatttaaaatccaagaacatgacttgaggccgaaaatgacaa |
100 |
Q |
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| T |
42057556 |
atatttagcatcacttaccttggtaatattttaagcagaattgtatattatcgagtgtaatttaaaatccaagaacatgacttgaggccgaaaatgacaa |
42057457 |
T |
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| Q |
101 |
tgaatattttttgtttagagagagatgacatttgaagtttacaattgcagtaaggcatgctaattatataattaaaacattattatttattactgtataa |
200 |
Q |
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| T |
42057456 |
tgaatattttttgtttacagagagatgaca-ttgaagtttacaattgcagtaaggcatgctaattatataattaaaacattattatttattactgtataa |
42057358 |
T |
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| Q |
201 |
tagtgctaaccaattnnnnnnnctaaaacacgtcaattctattaaatttttatgacaatgaaattatata |
270 |
Q |
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| T |
42057357 |
tagtgctaaccaattaaaaaaactaaaacacgtcaattctattaaatttttatgacaatgaaattatata |
42057288 |
T |
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