View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_29 (Length: 247)
Name: NF6379_low_29
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37006817 - 37006580
Alignment:
| Q |
1 |
tttctaccgggcactacaattttgcttgttcaactcatagcaatttttacgagttggttgggatggaaaccactagtaaagagtggtgctgatggatatg |
100 |
Q |
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| T |
37006817 |
tttctaccgggcactacaattttgcttgttcaactcatagcaatttttacgagttggttgggatggaaaccactaataaagagtggtgctgatggatatg |
37006718 |
T |
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| Q |
101 |
gagcaggagaggttttttgtagtgcatatgtgattttatgctacttgccatttttgaaaggattgtttgggaaaggaaaatatgggatacccttgtctac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37006717 |
gagcaggagaggttttttgtagtgcatatgtggttttatgctacttgccatttttgaaaggattgtttgggaaaggaaaatatgggatacccttgtctac |
37006618 |
T |
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| Q |
201 |
aatatgcaaatcaatggtgctagctttactatttgttc |
238 |
Q |
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| T |
37006617 |
aatatgcaaatcaatggtgctagctttactatttgttc |
37006580 |
T |
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