View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_3 (Length: 624)
Name: NF6379_low_3
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 10 - 617
Target Start/End: Original strand, 43175134 - 43175741
Alignment:
| Q |
10 |
acatcatcatcttaagtgtggtttttaagataatcgggatcaaagttaacattatttttaatgatttgacaatttatgatcggtaaattggttgactaca |
109 |
Q |
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| T |
43175134 |
acatcatcatcttaagtgtggtttttaagataatcgggatcaaagttaacattatttttaatgatttgacaatttatgatcggtaaattggttgactaca |
43175233 |
T |
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| Q |
110 |
ctcaacgtgtatcaaaattagactcgtacgtaaatactgcaacaataaacgatattttttcttcaattttgataatgactttgtttgctttcttcccagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43175234 |
ctcaacgtgtatcaaaattagactcgtacgtaaatactgcaacaataaacgatattttttcttcaattttgataatgactttgtttgctttcttcccagt |
43175333 |
T |
|
| Q |
210 |
tttacataactgagcaagctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtattaagcattacca |
309 |
Q |
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| T |
43175334 |
tttacataactgagcaagctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtattaagcattacca |
43175433 |
T |
|
| Q |
310 |
gaaactttgaaaaggttgtggggaaaggagcatctggaacagtctaccatggttggattgatcataataccgaggtagctgtcaaaacgctatcttcctc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43175434 |
gaaactttgaaaaggttgtggggaaaggagcatctggaacagtctaccatggctggattgatcataataccgaggtagctgtcaaaatgctatcttcctc |
43175533 |
T |
|
| Q |
410 |
atcagctcaaggatatctgcaatttcaagcagaggtagtatcattaattaacttgcaaatttcatcaggcttattcacacatatatagcttcaacaattt |
509 |
Q |
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| T |
43175534 |
atcagctcaaggatatctgcaatttcaagcagaggtagtatcattaattaacttgcgaatttcatcaggcttattcacacatatatagcttcaacaattt |
43175633 |
T |
|
| Q |
510 |
tcttgtgagctgaaggaattatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaatacttgacaggtcttatagggttttg |
609 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43175634 |
tcttgtgaactgaaggaattatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaatacttgacaggtcttatagggttttg |
43175733 |
T |
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| Q |
610 |
tgatgatg |
617 |
Q |
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|||||||| |
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| T |
43175734 |
tgatgatg |
43175741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 199 - 471
Target Start/End: Complemental strand, 43221610 - 43221344
Alignment:
| Q |
199 |
ttcttcccagttttacataac-tgagcaagctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtat |
297 |
Q |
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| T |
43221610 |
ttcttcccagtttcccataaggtgatcaagctgggtgctaattcaagaataaagcaggaactagagtcgaagaaacaagaattcacctatgaagaagtat |
43221511 |
T |
|
| Q |
298 |
taagcattaccagaaactttgaaaaggttgtggggaaaggagcatctggaacagtctaccatggttggattgatcataataccgaggtagctgtcaaaac |
397 |
Q |
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|||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
43221510 |
taagaattaccagaaactttgagaaggttatagggaaaggagcatctggaacagtctaccatggctggattgatcataatac-------actgtcaaaat |
43221418 |
T |
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| Q |
398 |
gctatcttcctcatcagctcaaggatatctgcaatttcaagcagaggtagtatcattaattaacttgcaaattt |
471 |
Q |
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| T |
43221417 |
gctatcttccttatctgctcaaggatttctgcaatttcaagcagaggttgtatcattaattcacttgccaattt |
43221344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 227 - 476
Target Start/End: Original strand, 43166365 - 43166614
Alignment:
| Q |
227 |
gctgggtgcttattcaagaataaagcaggaactagagtcaaagaaacaagaattcagctatgaagaagtattaagcattaccagaaactttgaaaaggtt |
326 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||| || ||||||||||||||| | | |||| |
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| T |
43166365 |
gctgggtgctaattcaagaataaagcaggaactcgagtcaaaaaaacaagaattccgctacgaagaagtatacagaattaccagaaactttaagacggtt |
43166464 |
T |
|
| Q |
327 |
gtggggaaaggagcatctggaacagtctaccatggttggattgatcataataccgaggtagctgtcaaaacgctatcttcctcatcagctcaaggatatc |
426 |
Q |
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||||||||||||||||||||||||||||||| || |||||||| ||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
43166465 |
ttggggaaaggagcatctggaacagtctaccacggctggattgaccatgatactgaggtagctgtcaaaatgctgtcttcctcatcagctcaaggatatc |
43166564 |
T |
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| Q |
427 |
tgcaatttcaagcagaggtagtatcattaattaacttgcaaatttcatca |
476 |
Q |
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| T |
43166565 |
tgcaatttcaagcagaggttatatgattaattcacattcaaattttatca |
43166614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 529 - 617
Target Start/End: Original strand, 43166664 - 43166752
Alignment:
| Q |
529 |
tatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaatacttgacaggtcttatagggttttgtgatgatg |
617 |
Q |
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||||||||| |||| ||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
43166664 |
tatggtttttctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtgatgatg |
43166752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 529 - 617
Target Start/End: Complemental strand, 43221281 - 43221193
Alignment:
| Q |
529 |
tatggttttcctttctgattcacaggccaaactttttgctgtggttcatcataaatacttgacaggtcttatagggttttgtgatgatg |
617 |
Q |
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||||||||| |||| ||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
43221281 |
tatggtttttctttgtgattcataggccaaattttttgctacagttcatcataaatacttgaccagtcttataggttactgtgatgatg |
43221193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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