View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_30 (Length: 245)
Name: NF6379_low_30
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 2255803 - 2256023
Alignment:
| Q |
4 |
attactttgttacattataatatgatttaaaataaatgtataatcatatatcgaaagtttttcattgcaaattgttggaattaagtctaactcatattta |
103 |
Q |
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| T |
2255803 |
attactttgttgcattataatatgatttaaaataaatgtataatcatatatcgaaagtttttcatcgcaaattg---------agtctaactcatattta |
2255893 |
T |
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| Q |
104 |
taaaacctaaaccattcgtaaactcatacttataaaaccatttgtaaggcgaagaatgtttaatctaannnnnnnncaatacatcatctcacgaccaaca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | | |||||| ||||||||||||| |||||||||| |
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| T |
2255894 |
taaaacctaaaccattcgtaaactcatacttataaaaccatttgtaaagcaaagaatatctgatctaattttttttcaatacatcatcttacgaccaaca |
2255993 |
T |
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| Q |
204 |
cgactaacttaatgggtgtatataaatgat |
233 |
Q |
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|||||||||| ||| ||| ||||||||||| |
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| T |
2255994 |
cgactaacttgatgcgtgcatataaatgat |
2256023 |
T |
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