View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_33 (Length: 238)
Name: NF6379_low_33
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9873359 - 9873581
Alignment:
| Q |
1 |
atgttgcagatgtaaatatcgtgaggtttaaagtaacatcaagcgctgttttacgcaaatgcagaaatgctaacatgtggttaaagcaatatgaatgtac |
100 |
Q |
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| T |
9873359 |
atgttgcagatgtaaatatcgtgaggtttaaagtaacatcaagcgctgttttacgcaaatgcagaaaagctaacatgtggttaaagcaatatgaatgtac |
9873458 |
T |
|
| Q |
101 |
ataagtttgtcttaccaaaagttgatatttatattttatttaaaagaatatgaaaacaacaccaatcaaactctaaatctacgaggttgtcaagcagtgg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9873459 |
ataagtttgtcttaccaaaagttcatatttatattttgtttaaaagaatatgaaaacaacaccaatcaaactctaaatctacgaggttgtcaagcagtgg |
9873558 |
T |
|
| Q |
201 |
ttgcaagtttttggttttaaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
9873559 |
ttgcaagtttttggttttaaatt |
9873581 |
T |
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