View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_35 (Length: 233)
Name: NF6379_low_35
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12989826 - 12989594
Alignment:
| Q |
1 |
tcatcgataacgggtgagttttcttagcaataatttaaaatattttgattgttctagcaggcaatgttagagttatataatttggtttatataaatccag |
100 |
Q |
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| T |
12989826 |
tcatcgataacgggtgagttttcttagcaatcatttaaaatattttgattgttctagcaggcaatgttagagttatataatttggtttatataaatccag |
12989727 |
T |
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| Q |
101 |
catcattcatgtgaaagcctcctaggcttgaagcatgatgaactacagactaacaattcaaagctatgttacacaactccagattttaaattaaaataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12989726 |
catcattcatgtgaaagcctcctaggcttgaagcatgacgaactacagactaacaattcaaagctatgttacacaactccagattttaaattaaaataaa |
12989627 |
T |
|
| Q |
201 |
tggtactttcacatcggattagggtaggaagaa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12989626 |
tggtactttcacatcggattagggtaggaagaa |
12989594 |
T |
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