View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_38 (Length: 226)
Name: NF6379_low_38
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32592823 - 32592915
Alignment:
| Q |
1 |
catacatgaatctatcatttgctaattaaatttatgtatcattataaaactaaatcatatgg--tgttcatataatagttgtttcatgacaattttg |
95 |
Q |
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| T |
32592823 |
catacatgaatctatcatttgctaa----atttatgtatcattataaaactaaatcatacggtatgttcatataatatttgttttatgacaattttg |
32592915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 220
Target Start/End: Original strand, 32592981 - 32593098
Alignment:
| Q |
106 |
ttgtgtgcttttggtcaagtttgttgagttagcaagtgctatgttttgtttggatt-nnnnnnnncgat--ttgagatatggtatgtaaatggcaaatag |
202 |
Q |
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| T |
32592981 |
ttgtgtacttttggtcaagtttgttgagttagcaaatgctatgttttgtttggattaaaaaaaaaatatgattgacatatggtatgtaaatggcaaatag |
32593080 |
T |
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| Q |
203 |
attgaagaatatggaatt |
220 |
Q |
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| T |
32593081 |
attgaagaatatggaatt |
32593098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 49207541 - 49207490
Alignment:
| Q |
106 |
ttgtgtgcttttggtcaagtttgttgagttagcaagtgctatgttttgtttg |
157 |
Q |
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| T |
49207541 |
ttgtgtacttttactcaagtttgttgagttagcaagtgctatggtttgtttg |
49207490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 49207658 - 49207588
Alignment:
| Q |
27 |
taaatttatgtatcattataaaactaaatcatatgg--tgttcatataatagttgtttcatgacaattttg |
95 |
Q |
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| T |
49207658 |
taaatttctgtatcattataaaattaaatcattcggtatgttcatataatagtagtatcatgacagttttg |
49207588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 49212111 - 49212060
Alignment:
| Q |
106 |
ttgtgtgcttttggtcaagtttgttgagttagcaagtgctatgttttgtttg |
157 |
Q |
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|||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
49212111 |
ttgtgtacttttactcaggtttgttgagttagcaagtcctatgttttgtttg |
49212060 |
T |
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