View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6379_low_39 (Length: 221)

Name: NF6379_low_39
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6379_low_39
NF6379_low_39
[»] chr3 (14 HSPs)
chr3 (1-213)||(2659645-2659860)
chr3 (106-189)||(9595168-9595251)
chr3 (106-192)||(2644879-2644968)
chr3 (95-190)||(7324950-7325045)
chr3 (97-174)||(2630766-2630843)
chr3 (108-184)||(747672-747748)
chr3 (97-189)||(2501596-2501688)
chr3 (106-184)||(679754-679832)
chr3 (106-192)||(2491521-2491607)
chr3 (125-186)||(9562505-9562566)
chr3 (101-184)||(755167-755250)
chr3 (21-60)||(2644990-2645029)
chr3 (1-61)||(2501500-2501563)
chr3 (130-174)||(2476115-2476159)
[»] scaffold0097 (1 HSPs)
scaffold0097 (4-60)||(34005-34064)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2659860 - 2659645
Alignment:
Q  1 cctaatttcgcaaagaagcatc---gtatgtcaaccaagcgccaccacctcatgctaacaaattcttgtgattatgattattattatgatcgtgacatag 97  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659860 cctaatttcgcaaagaagcatcttcgtatgtcaaccaagcgccaccacctcatgctaacaaattcttgtgattatgattattattatgatcgtgacatag 2659761  T
Q  98 ttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactg 197  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2659760 ttatgtgcgattctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatcactg 2659661  T
Q  198 catcgacctgatgatg 213  Q
    ||||||||||||||||    
T  2659660 catcgacctgatgatg 2659645  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 189
Target Start/End: Complemental strand, 9595251 - 9595168
Alignment:
Q  106 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatgga 189  Q
    |||||||||||||  ||| |||| |||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||    
T  9595251 gattctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatgga 9595168  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 2644968 - 2644879
Alignment:
Q  106 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattc---ctaatactctcacaaatggacat 192  Q
    ||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||   ||| |||||||||||| ||||||    
T  2644968 gattccccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttcctactagtactctcacaaacggacat 2644879  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 190
Target Start/End: Complemental strand, 7325045 - 7324950
Alignment:
Q  95 tagttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggac 190  Q
    |||||||||  ||||| ||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||  ||||| ||| |||||||||||||||||    
T  7325045 tagttatgtatgattccccaattccttcgcttttttctacttctgccgtttttacacaaacacaactacacatttctagtactctcacaaatggac 7324950  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 2630766 - 2630843
Alignment:
Q  97 gttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaat 174  Q
    |||||||  ||||||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||||||  |||||||    
T  2630766 gttatgtatgattctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 747748 - 747672
Alignment:
Q  108 ttctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 184  Q
    |||||||||||| ||  |||| |||||||||| |||||||||||| ||||||||||||  |||||||||||| ||||    
T  747748 ttctccaatcccctcggttttatctacttctatcgttgttacacatacacaactttaccctcctaatactcttacaa 747672  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 2501596 - 2501688
Alignment:
Q  97 gttatgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatgga 189  Q
    |||||||  ||||| ||||||||||  | ||| ||||||||| | ||| ||||||||||||||||  ||||||||| ||||||||||||||||    
T  2501596 gttatgtatgattccccaatccctttgcctttttctacttctgcagttcttacacaaacacaactacacattcctagtactctcacaaatgga 2501688  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 679832 - 679754
Alignment:
Q  106 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 184  Q
    |||||||||||||| ||  |||| || |||||||||||||||||||| ||||||||||||  |||||||| ||| ||||    
T  679832 gattctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaa 679754  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 2491521 - 2491607
Alignment:
Q  106 gattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacat 192  Q
    ||||| ||||| || || ||||| ||||||||||||||| ||||||| || |||||||||  ||||| || ||||||||||||||||    
T  2491521 gattccccaataccctcgcttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacat 2491607  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 9562566 - 9562505
Alignment:
Q  125 ttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaat 186  Q
    |||| ||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||||||    
T  9562566 ttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaaat 9562505  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 755250 - 755167
Alignment:
Q  101 tgtgcgattctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 184  Q
    |||| ||||| |||||||| ||  |||| ||||||||||| ||| ||||||| ||||||||||||  ||| |||||| ||||||    
T  755250 tgtgtgattccccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaatactatcacaa 755167  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 2645029 - 2644990
Alignment:
Q  21 tcgtatgtcaaccaagcgccaccacctcatgctaacaaat 60  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  2645029 tcgtatggcaaccaaacgccaccacctcatgctaacaaat 2644990  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2501500 - 2501563
Alignment:
Q  1 cctaatttcgcaaagaagcatc---gtatgtcaaccaagcgccaccacctcatgctaacaaatt 61  Q
    ||||| ||||||||||| ||||   |||||||||||||||||| | || |||||||||||||||    
T  2501500 cctaaattcgcaaagaaacatcttcgtatgtcaaccaagcgccgctacatcatgctaacaaatt 2501563  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 2476115 - 2476159
Alignment:
Q  130 tctacttctaccgttgttacacaaacacaactttacattcctaat 174  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||    
T  2476115 tctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 34005 - 34064
Alignment:
Q  4 aatttcgcaaagaagca---tcgtatgtcaaccaagcgccaccacctcatgctaacaaat 60  Q
    |||||||||||||| ||   || |||||||||||||| ||||||||||||| ||||||||    
T  34005 aatttcgcaaagaaacaccttcatatgtcaaccaagcaccaccacctcatgttaacaaat 34064  T

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