View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_6 (Length: 565)
Name: NF6379_low_6
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Original strand, 47298326 - 47298874
Alignment:
| Q |
18 |
agcatcgttcccttctctcctctctaacagatttgaatagaaccgagccatactaacaaaaacttacttctctaattttgaccaaat----caatacnnn |
113 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | |||||| |
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| T |
47298326 |
agcatcattcccttctctcctctctaacagatttgaatagaaccgtgccatactaacaaaaacttacttctctaattttgactaattaagtcaatacaaa |
47298425 |
T |
|
| Q |
114 |
nnnnnnnggtataatcaactgggcctaattaagagactaaaacagatgcaaagcaacctaaggctaaataaaacagccgaaaataataacaacaaagaat |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47298426 |
aaaag--ggtataatcaactgggcctaattaagagactaaaacagatgcaaagcagcctaaggctaaataaaacagccgaaaataataaaaacaaagaat |
47298523 |
T |
|
| Q |
214 |
aggggctgacagaattataatatgaaaacctatatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagccccca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
47298524 |
aggggctgacagaattataatatgaaaacctatatactagttaatatatcacaataacaaacaggtctttcattatcattatatagcacacaagccccca |
47298623 |
T |
|
| Q |
314 |
actttatttaacagcaatcacgacattacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgatttt |
413 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
47298624 |
actttatttaacagcaatcacgacagtacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggagcactcaatgtaggatgatttt |
47298723 |
T |
|
| Q |
414 |
ggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattctt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47298724 |
ggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttatattctt |
47298823 |
T |
|
| Q |
514 |
atatgggacgatataggttgatccaggaaatgttccagccccaccctttgc |
564 |
Q |
| |
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| T |
47298824 |
atatgggacgatataggttgctccaggaaaaggtccagccccaccttttgc |
47298874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 149 - 564
Target Start/End: Original strand, 47291856 - 47292267
Alignment:
| Q |
149 |
actaaaacagatgcaaagcaacctaaggctaaat-----aaaacagccgaaaataataacaacaaagaataggggctgacagaattataatatgaaaacc |
243 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||||||||||| ||||||||||||| ||| || |
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| T |
47291856 |
actaaaacagatgcaaagcagcctaaggctaaattaaataaaacagctgataataataaaaacaaagaataggggctgatagaattataatattaaatcc |
47291955 |
T |
|
| Q |
244 |
tatatactagttaatatatcacaataacaaacaggtctttcattataattatatagcacaaaagcccccaactttatttaacagcaatcacgacattaca |
343 |
Q |
| |
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|| ||||||||||||||||| || ||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
47291956 |
tagatactagttaatatatctcacaaacaat-aggcctttcattatcattatatagcacacaagcccccaactttatttaacaggaatcacgacattac- |
47292053 |
T |
|
| Q |
344 |
attttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttg |
443 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47292054 |
-------aaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtaggataattttggttaccaagcatctcatccaactcttttg |
47292146 |
T |
|
| Q |
444 |
caaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaa |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292147 |
caaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaa |
47292246 |
T |
|
| Q |
544 |
tgttccagccccaccctttgc |
564 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
47292247 |
tgttccagccccaccttttgc |
47292267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 383 - 532
Target Start/End: Complemental strand, 47243258 - 47243109
Alignment:
| Q |
383 |
aaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
482 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
47243258 |
aaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta |
47243159 |
T |
|
| Q |
483 |
acatcaaagtttcttctccatttatattcttatatgggacgatataggtt |
532 |
Q |
| |
|
| || || ||||||||| ||| |||||||| ||||| ||||||||| |
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| T |
47243158 |
atattaacccttcttctccttttgcattcttatgcgggacaatataggtt |
47243109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 47291709 - 47291790
Alignment:
| Q |
18 |
agcatcgttcccttctctcctctctaacagatttgaatagaaccgagccatactaacaaaaacttacttctctaattttgac |
99 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47291709 |
agcatcattcccttctatcctctctaacagatttgaatacaaccgtgccatactaacaaaaacttacttctctaattttgac |
47291790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 360 - 558
Target Start/End: Complemental strand, 47284150 - 47283952
Alignment:
| Q |
360 |
caaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc |
459 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||| |||||| |||||||| ||||||| ||||| ||| ||||||| ||||||||||||||| | |
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|
| T |
47284150 |
caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac |
47284051 |
T |
|
| Q |
460 |
ttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc |
558 |
Q |
| |
|
|||||||| || ||||| |||| || ||| ||||||||| | | |||||||| ||||| ||||| |||| |||||| || | |||||||||||| |
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| T |
47284050 |
ttcagaggttaagaaaattagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccacc |
47283952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 381 - 557
Target Start/End: Complemental strand, 47268165 - 47267988
Alignment:
| Q |
381 |
caaaactagga-ccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg |
479 |
Q |
| |
|
||||||||||| ||||| | | |||| | |||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |
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|
| T |
47268165 |
caaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaacta |
47268066 |
T |
|
| Q |
480 |
gtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac |
557 |
Q |
| |
|
|||| || ||| ||||||||| | || |||||||| ||||| |||||||| || ||||||||| | |||||||||| |
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|
| T |
47268065 |
gtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac |
47267988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 359 - 483
Target Start/End: Complemental strand, 47257409 - 47257285
Alignment:
| Q |
359 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
458 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||| |
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| T |
47257409 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat |
47257310 |
T |
|
| Q |
459 |
cttcagagggcaaacaaattggtaa |
483 |
Q |
| |
|
|||||| ||||| ||||||||||| |
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|
| T |
47257309 |
cttcaggaggcaagcaaattggtaa |
47257285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 526
Target Start/End: Complemental strand, 47279558 - 47279391
Alignment:
| Q |
359 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
458 |
Q |
| |
|
|||||||||||||| || || |||||||||| ||| | | |||||| |||||||||||||||| ||||| ||| ||||||| ||||||||||||||| |
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|
| T |
47279558 |
acaaactataaggtggagatgacaaaactaggcccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataa |
47279459 |
T |
|
| Q |
459 |
cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgata |
526 |
Q |
| |
|
||||||||| || ||||| |||| |||||| ||||||||| | | |||||||| ||||| |||| |
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|
| T |
47279458 |
cttcagaggttaagaaaattagtaatatcaaaccttcttctccttctgcattcttatgtgggatgata |
47279391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 359 - 532
Target Start/End: Complemental strand, 32731949 - 32731776
Alignment:
| Q |
359 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
458 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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|
| T |
32731949 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat |
32731850 |
T |
|
| Q |
459 |
cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggtt |
532 |
Q |
| |
|
|||||| |||||| |||||||| || || || ||||||||| ||| |||||||| ||||| ||||||||| |
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|
| T |
32731849 |
cttcagggggcaagcaaattggaaatattaacccttcttctccttttgcattcttatgcgggacaatataggtt |
32731776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 384 - 483
Target Start/End: Complemental strand, 20519930 - 20519834
Alignment:
| Q |
384 |
aactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaa |
483 |
Q |
| |
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||||| |||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| |||||||||| |
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| T |
20519930 |
aactatgacctctcgttgtaggatgat---ggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaa |
20519834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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