View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6379_low_8 (Length: 498)
Name: NF6379_low_8
Description: NF6379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6379_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 38117109 - 38117597
Alignment:
| Q |
1 |
tcagcttactcgtaatgattagtcaatgtaatcgcctcatgtcatatctaggtatatgcataatctctcacccccctaaacattaataatcaggtaaaaa |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117109 |
tcagctcactcgtaatgattagtcaatgtaatcgcctcatgtcatatctaggtatatgcataatctctcacccccctaaacattaataatcaggtaaaaa |
38117208 |
T |
|
| Q |
101 |
gtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117209 |
gtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttga |
38117308 |
T |
|
| Q |
201 |
ctgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117309 |
ctgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataa |
38117408 |
T |
|
| Q |
301 |
atctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38117409 |
atctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagta |
38117508 |
T |
|
| Q |
401 |
gtagtccaaccttttccccccaaaatgttannnnnnnnnnnaacttgcctttgtttgaattcaacttgcttgactaatttgttgatgatg |
490 |
Q |
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| T |
38117509 |
gtagtccaaccttttccccccaaaatgtta-ttttttttttaacttgcctttgtttgaattcaacttgcttgactaatttgttgatgatg |
38117597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 38160935 - 38161148
Alignment:
| Q |
1 |
tcagcttactcgtaatgattagtcaatgtaatcgcctcatgtcatatctaggtatatgcataatctctcacccccctaaacattaataatcaggtaaaaa |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| | |
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| T |
38160935 |
tcagctcactcgaaatgattagtcaatgtagatgcctcttgtcatgtctaggtatatgcataatctctcacccctttaaacattattaatcaggtaaaga |
38161034 |
T |
|
| Q |
101 |
gtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttga |
200 |
Q |
| |
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|||||||| ||||||||| |||||||||||| |||||||||||||||| || | | |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
38161035 |
gtatacttcgatagaagatgtgtgaatgtgccaactctgggaatacttaggttgttttggatcattaatatccaattcatttctgttgggctgtgtttta |
38161134 |
T |
|
| Q |
201 |
ctgtttatcattag |
214 |
Q |
| |
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| |||||||||||| |
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| T |
38161135 |
cggtttatcattag |
38161148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 403
Target Start/End: Original strand, 38161156 - 38161308
Alignment:
| Q |
244 |
tgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacg |
343 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||| || || |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
38161156 |
tgagtcatggcatttggttactcttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttca-gaa---- |
38161250 |
T |
|
| Q |
344 |
agtacaggaccg-tgtttcttgaattctgtaagtgctgcatggtaaaa-agatgcagtagta |
403 |
Q |
| |
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||| |||| ||||||||||||| |||||||| |||||||||||| ||||||||||||| |
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|
| T |
38161251 |
---acaagaccaatgtttcttgaattatgtaagtg-tgcatggtaaaagagatgcagtagta |
38161308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 38139672 - 38139721
Alignment:
| Q |
358 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
407 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||| |||||| |
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|
| T |
38139672 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
38139721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 490
Target Start/End: Original strand, 38139771 - 38139820
Alignment:
| Q |
442 |
aacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgatg |
490 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||| ||||||||||||||| |
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|
| T |
38139771 |
aacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgatg |
38139820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 38161326 - 38161374
Alignment:
| Q |
442 |
aacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgat |
489 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| ||||||||| |||| |
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|
| T |
38161326 |
aacttgcctttgtttgaatttaacttgccttgaccaatttgttgttgat |
38161374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 49004912 - 49005245
Alignment:
| Q |
1 |
tcagcttactcgtaatgattagtcaatgtaatcgcctcatgtcatatctaggtatatgcataatctctcacccccctaaacattaataatcaggtaaaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
49004912 |
tcagctcactcgtaatgattagtcaatgtagttgcctcgtgtcatgtctaggtatatgcataatctctcacccccc-aaacatttttcatcaggtaaaaa |
49005010 |
T |
|
| Q |
101 |
gtatactttgatagaagaggtgtgaatgtgctaactctgggaatacttgggctttcttggatcattaatatccaattcatttttattgggctgtgcttga |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
49005011 |
gtatactttgataaaacaggtgtgaatgtgctaactctgggaatacttgggctgtcttggatcattaatatccaattcatttctattgggctgtgtttga |
49005110 |
T |
|
| Q |
201 |
ctgtttatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
49005111 |
ctgtttatcattagattaaactttacttgaaaatatgtaatcatcattcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataa |
49005210 |
T |
|
| Q |
301 |
atctgtagcattttagcttgagggatggcatttca |
335 |
Q |
| |
|
|||| |||||| |||| |||| ||||||||||||| |
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|
| T |
49005211 |
atctatagcatcttagtttgaaggatggcatttca |
49005245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 49005279 - 49005318
Alignment:
| Q |
391 |
agatgcagtagtagtccaaccttttccccccaaaatgtta |
430 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
49005279 |
agatgcagtagtagtccaacctttttccccctaaatgtta |
49005318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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