View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_high_2 (Length: 569)
Name: NF6380_high_2
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 44344033 - 44344316
Alignment:
| Q |
1 |
acagatacaccagacatcttcttttcactgatcaaaggttaattaattagcaattagttcctgagttagtgtaccacattttattatgatagctaaattt |
100 |
Q |
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| T |
44344033 |
acagatacaccagacatcttcttttcactgatcaaaggttaattaattagcaattagttccttagttagtgtaccacattttattatgatagctaaattt |
44344132 |
T |
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| Q |
101 |
aagaatatatataatgcatgcatgcatgcgtgcatttgagagacaatgacaatcatcaattcaaaattcaagatagaaattatttgataagtaagacaat |
200 |
Q |
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| T |
44344133 |
aagaatat----aatgcatgcatgcatgcgtgcatttgagagacaatgacaatcatcaattcaaaattcaagatagaaattatttgataagtaagacaat |
44344228 |
T |
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| Q |
201 |
gcattgttacttacaagtggaagaaccaaaaggtgatgaaaatgagaaattgagaaggaaaattcagattattattattgctgggatt |
288 |
Q |
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| T |
44344229 |
gcattgttacttacaactggaagaaccaaaaggtgatgaaaatgagaaattgagaaggaaaattcagattattattattgctgggatt |
44344316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 357 - 559
Target Start/End: Original strand, 44344383 - 44344585
Alignment:
| Q |
357 |
agatgtatgttagtttttatacttacaagtgaaaatgaaatgatgagaagagaagaggaagaattgttggttcnnnnnnnngaaaggcgttggagtagga |
456 |
Q |
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| T |
44344383 |
agatgtaggttagtttttttacttacaagtgaaaatgaaatgatgagaagagaagaggaagaattgttggttcaaaaaaaagaaaggcgttggagtagga |
44344482 |
T |
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| Q |
457 |
gtttgtgatgatccaaaatttggtgaagaaaagataaaccattggaacgtgtaatgtagcatgcacaacacttgtttctcttccatgtcgtcaatgacct |
556 |
Q |
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| T |
44344483 |
gtttgtgatgatccaaaatttggtgaacaaaagataaaccattggaacgtgtaatgtagcatgcacaacacttgtttctcttccatgtcgtcaatgacct |
44344582 |
T |
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| Q |
557 |
atg |
559 |
Q |
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| T |
44344583 |
atg |
44344585 |
T |
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