View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_high_3 (Length: 362)
Name: NF6380_high_3
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 5597668 - 5597331
Alignment:
| Q |
11 |
caaagggctgcaatttgttgtttaatgtcaaatctctttcaccatatcttccaatggattcacacttttcttcaagtcaccatctaacctatcttttatt |
110 |
Q |
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| T |
5597668 |
caaagggctgcaatttgttgtttaatgtcaaatctctttcaccatatcttccaatggattcacacttttcttcaagtcaccatctaacctattttttatt |
5597569 |
T |
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| Q |
111 |
tcacttgaagacaagttatcaccttcaagcaaaagtcaaaatacaaaatgaattgagtgaagataataaacagaaataagtcacaatccaaacgcatggc |
210 |
Q |
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| T |
5597568 |
ccacttgaagacaagttatcaccttcaagcaaaagtcaaaatacaaaatgaattgagtgaagataataaacagaaataagtcacaatccaaacgcatggc |
5597469 |
T |
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| Q |
211 |
tcattaaaatcataaagcattgatgagatgatagatcatagatgattatcatgtacaccaacctataaactgtacggatgtggcccttgagaattcggat |
310 |
Q |
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| T |
5597468 |
tcattaaaatcataaagcattgatgagatgatagatcatagatgattatcatgtacaccaacctataaactgtacggatgtggcccttgagaattcggat |
5597369 |
T |
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| Q |
311 |
ttttcgccatcacaaataggtcgcattcacacaattag |
348 |
Q |
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| T |
5597368 |
ttttcgccatcacaaattggtcgcattcacacaattag |
5597331 |
T |
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