View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_high_5 (Length: 247)
Name: NF6380_high_5
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 44344614 - 44344725
Alignment:
| Q |
1 |
ttgattttatttgatttgatttggttagctacactgaaataaacaatttccatgtagattaactttttataacggatcttgctaacaaatacatttagga |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| || ||| |||||||||| || |||||| |
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| T |
44344614 |
ttgattttatttgatttgagttggttagctacactgaaataaacaatttctatgtagattagctttttataatgggtctagctaacaaatgcacttagga |
44344713 |
T |
|
| Q |
101 |
cagtagttaagg |
112 |
Q |
| |
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|||||||||||| |
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| T |
44344714 |
cagtagttaagg |
44344725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 44344792 - 44344843
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtg |
230 |
Q |
| |
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|||||||||||||| | ||||||||||| ||||||||| ||||||||||||| |
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| T |
44344792 |
tgaatacacaacttccgaaataaatgtttaactttaaacttcttatcaagtg |
44344843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 31752759 - 31752810
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtg |
230 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||||||||| |
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| T |
31752759 |
tgaatacacaacttccaaaataaaccttttactttaaatttcttatcaagtg |
31752810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 46299495 - 46299444
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtg |
230 |
Q |
| |
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|||||||| || ||||||||||||| || ||||||||||||||||||||||| |
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| T |
46299495 |
tgaatacataaatttcaaaataaatttttaactttaaatttcttatcaagtg |
46299444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 44698071 - 44698015
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtgcccta |
235 |
Q |
| |
|
|||||||||||||| ||| ||||| ||| |||||||| || ||||||||||||||| |
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|
| T |
44698071 |
tgaatacacaacttccaagataaaacttccactttaaacttattatcaagtgcccta |
44698015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 9050027 - 9049971
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtgcccta |
235 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||| || ||||||||||||||| |
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| T |
9050027 |
tgaatacacaactttcaaaataaactttctattttaaactttttatcaagtgcccta |
9049971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 13521778 - 13521833
Alignment:
| Q |
180 |
gaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtgcccta |
235 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||| ||||||||| |||||||| |
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|
| T |
13521778 |
gaatacacaaatttcaaaataaaatttctactttaaacttcttatcaggtgcccta |
13521833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 13611313 - 13611368
Alignment:
| Q |
180 |
gaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtgcccta |
235 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||| ||||||||| |||||||| |
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| T |
13611313 |
gaatacacaaatttcaaaataaaatttctactttaaacttcttatcaggtgcccta |
13611368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 844818 - 844874
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtgcccta |
235 |
Q |
| |
|
|||||||||||||| ||||||| | | | |||||||| |||||||||||||||||| |
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| T |
844818 |
tgaatacacaacttccaaaatagaattaccactttaaacttcttatcaagtgcccta |
844874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 27915259 - 27915203
Alignment:
| Q |
179 |
tgaatacacaactttcaaaataaatgttcaactttaaatttcttatcaagtgcccta |
235 |
Q |
| |
|
||||||||||||||| || ||||| ||| | |||||||||||||||||||| |||| |
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| T |
27915259 |
tgaatacacaacttttaagataaaccttccattttaaatttcttatcaagtgtccta |
27915203 |
T |
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