View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_low_1 (Length: 921)
Name: NF6380_low_1
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 490 - 903
Target Start/End: Original strand, 6668344 - 6668756
Alignment:
| Q |
490 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttttgttgattgtttgctatatacttttaagagattttcag |
589 |
Q |
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| T |
6668344 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttccgttgattgtttgcaatatacttttcagagattttcag |
6668443 |
T |
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| Q |
590 |
tagtttaacccttaattttaatttcaacttttaggctattaatcgatgaagaacaaagcttgaatgttctgaaggtggtgtcatgcgataactaacaggt |
689 |
Q |
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| T |
6668444 |
tagtttaacccttaattttaatttcaacttttaggctattaaataatgaagaacaa-gcttgaatgctctgaaggtggtgtcatgcgataactaacaggt |
6668542 |
T |
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| Q |
690 |
gtagataatgtatgtatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatatttttgttacagctattgttataa |
789 |
Q |
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| T |
6668543 |
gtagataatgtatatatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatattttcgttacagctattgttataa |
6668642 |
T |
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| Q |
790 |
ttctttttccccttcattggtttctcttctgcagtgaaaatcaatttagttagcaatgcataatgttgttggtgatctcatctgcgttcagatgttgtcg |
889 |
Q |
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| T |
6668643 |
ttctttttccccttcattggtttctcttctgcagtgaaaatcaatttagttagcaatgcataatgttgttggtgatctcatctgcgttcagatgttgccg |
6668742 |
T |
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| Q |
890 |
tcatctggtggatt |
903 |
Q |
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| T |
6668743 |
tcatctggtggatt |
6668756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 6667896 - 6668238
Alignment:
| Q |
18 |
agagcagcataaacgaaccagtaaaaaacccaacaaggaaaagagttctatcgtcattccaaagcttcactatgctttcaggtttctctttttacacatt |
117 |
Q |
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| T |
6667896 |
agagcagcataaacgaaccagtaaaaaacccaacaaggaaaagagttctatcgtcattccaaagcttcactatgctttcaggtttctctttttacacatt |
6667995 |
T |
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| Q |
118 |
tcgtttactctttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttaacatattgaaaaacgaaacgaatatatggtgattgata |
217 |
Q |
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| T |
6667996 |
tcgtttactctttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttagcatattgaaaaacgaaacgaatatatggtgattgata |
6668095 |
T |
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| Q |
218 |
tttagatcatcacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtgattgagattttttcttcaatttgcttg |
317 |
Q |
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| T |
6668096 |
tttagatcatcacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtgattgagattttttcttcaatttgcttg |
6668195 |
T |
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| Q |
318 |
atgaaatttattaaaaaatgattttcatttttagaaaagatgg |
360 |
Q |
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| T |
6668196 |
atgaaatttattaaaaaatgattttcatttttagaaaagatgg |
6668238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 12529723 - 12529663
Alignment:
| Q |
298 |
ttttttcttcaatttgcttgatgaaatttattaaaaaa--tgattttcatttttagaaaag |
356 |
Q |
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|||||| ||||||||| ||||||||||||| ||||||| || | |||||||||||||||| |
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| T |
12529723 |
ttttttgttcaatttgattgatgaaatttaataaaaaaactgttgttcatttttagaaaag |
12529663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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