View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_low_11 (Length: 216)
Name: NF6380_low_11
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 30242095 - 30242307
Alignment:
| Q |
1 |
aacaacttacattaaggagaataagtgaccggccaaaagcttagattgaaaaggcattgcacaacaacaaaatcattcccttcatgtttacaacaaaaat |
100 |
Q |
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| T |
30242095 |
aacaacttacattaaggagaataagtgaccggccaaaagcttagattgaaaaggcattgcacaacaacaaaatcattcccttcatgtttacaacaaaaat |
30242194 |
T |
|
| Q |
101 |
ataaagttttccatccaatctgaaacaatcaacaagttattttcaatgggaaattgtcaaacaaagattatcatggtctgtttagtggacataataatac |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30242195 |
ataatgttttccatccaatctgaaacaatcaacaagttatttttaatgggaaattgtcaaacaaagattatcatggtatgtttagtggacataataatac |
30242294 |
T |
|
| Q |
201 |
gataaagatgaat |
213 |
Q |
| |
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||||||||||||| |
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| T |
30242295 |
gataaagatgaat |
30242307 |
T |
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