View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6380_low_3 (Length: 566)
Name: NF6380_low_3
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6380_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 23 - 554
Target Start/End: Original strand, 51008384 - 51008915
Alignment:
| Q |
23 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
122 |
Q |
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| T |
51008384 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
51008483 |
T |
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| Q |
123 |
agacattcattggtataagcaactttgtttctacttgatttgcttagataatatttttgg----tataagctgttttatgtatgcatatgatctaaatat |
218 |
Q |
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| T |
51008484 |
agacattcattggtataagcaaatttgtttctacttgatttgcttagataatatttttggtatatataagctgttttatgtatgcatatgatctaaatat |
51008583 |
T |
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| Q |
219 |
tttgatgatgatgattcagttaactattgctgttatttaagcttattgtatgaatataaagaataaattctactgannnnnnnggatgtatgcatgtgag |
318 |
Q |
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| T |
51008584 |
tttgatgatgatgattcagttaactattgctgtcatttaagcttattgtatgaatataaagaataaattctactgatttttttgcatgtatgcatgtgag |
51008683 |
T |
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| Q |
319 |
tatttaaaaaatgcatattctaattgtacattatgtcattaattatctgatatattccttacaaacaaatcatatatataagacatgacaaaattatcac |
418 |
Q |
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| T |
51008684 |
tatttaaaaaatgaatattctaattgtacattatgtc----attatctgatatattccttacaaacaaatcatatatataagacatgacaaaattatcac |
51008779 |
T |
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| Q |
419 |
atgatgtatgattctgatatctgacaaattttattatggtacattttgtgtgtttgctagctagctagctaggtagtaaaagtttcagcatctattggat |
518 |
Q |
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| T |
51008780 |
atgatgtatgattctgatatctgacaaattttattatggtacattttgtgtgtttgctagctagctagctaggtagtaaaagtttcagcatctattggat |
51008879 |
T |
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| Q |
519 |
tcttattaattattaagagtgtgacatgaacaattt |
554 |
Q |
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| T |
51008880 |
tcttattaattattaagagtgtgacatgaacaattt |
51008915 |
T |
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