View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6380_low_7 (Length: 352)

Name: NF6380_low_7
Description: NF6380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6380_low_7
NF6380_low_7
[»] chr4 (9 HSPs)
chr4 (61-343)||(25201464-25201744)
chr4 (139-341)||(13957478-13957681)
chr4 (64-333)||(51758632-51758901)
chr4 (176-341)||(10142410-10142576)
chr4 (139-341)||(42511386-42511586)
chr4 (259-341)||(14192065-14192147)
chr4 (165-341)||(51337817-51337997)
chr4 (207-341)||(28143196-28143333)
chr4 (62-300)||(20151992-20152231)
[»] chr7 (13 HSPs)
chr7 (61-341)||(39038311-39038589)
chr7 (62-341)||(43178647-43178923)
chr7 (185-341)||(24441706-24441864)
chr7 (207-341)||(6195668-6195805)
chr7 (165-341)||(6189152-6189332)
chr7 (259-341)||(19311691-19311773)
chr7 (165-341)||(48636868-48637048)
chr7 (259-341)||(8069846-8069928)
chr7 (139-275)||(8113640-8113778)
chr7 (115-324)||(23305442-23305648)
chr7 (265-324)||(8113566-8113625)
chr7 (165-341)||(48238625-48238804)
chr7 (176-249)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (62-341)||(11648157-11648435)
chr8 (61-341)||(960728-961008)
chr8 (187-293)||(35824166-35824273)
chr8 (237-341)||(602175-602280)
chr8 (183-341)||(11994463-11994623)
chr8 (139-257)||(9381946-9382062)
chr8 (189-271)||(32073462-32073545)
chr8 (82-249)||(24683070-24683231)
chr8 (259-341)||(2878957-2879039)
chr8 (259-341)||(6927306-6927388)
chr8 (259-341)||(28509524-28509606)
chr8 (259-341)||(28516731-28516813)
[»] chr6 (6 HSPs)
chr6 (61-323)||(1830844-1831104)
chr6 (139-341)||(11680517-11680720)
chr6 (175-335)||(14677914-14678076)
chr6 (259-341)||(33516375-33516457)
chr6 (175-341)||(4064985-4065150)
chr6 (185-300)||(14679000-14679116)
[»] chr5 (8 HSPs)
chr5 (61-335)||(5120580-5120856)
chr5 (61-221)||(23318168-23318327)
chr5 (139-341)||(43171066-43171267)
chr5 (175-328)||(26402144-26402295)
chr5 (175-341)||(14651489-14651656)
chr5 (165-341)||(7850480-7850660)
chr5 (61-136)||(33922247-33922322)
chr5 (259-341)||(38491310-38491392)
[»] chr1 (12 HSPs)
chr1 (61-221)||(12783770-12783929)
chr1 (75-292)||(47397224-47397437)
chr1 (187-335)||(12028035-12028183)
chr1 (187-324)||(5208454-5208592)
chr1 (223-341)||(48646236-48646355)
chr1 (165-341)||(36296868-36297048)
chr1 (165-341)||(42722403-42722583)
chr1 (207-341)||(28945560-28945697)
chr1 (259-341)||(26221954-26222036)
chr1 (258-328)||(49228403-49228473)
chr1 (223-328)||(35501355-35501460)
chr1 (210-257)||(12783628-12783675)
[»] chr3 (5 HSPs)
chr3 (139-333)||(47185206-47185401)
chr3 (259-341)||(6024505-6024587)
chr3 (165-341)||(23044645-23044825)
chr3 (207-341)||(31884705-31884842)
chr3 (205-258)||(44879476-44879529)
[»] chr2 (17 HSPs)
chr2 (139-341)||(25621679-25621882)
chr2 (61-230)||(6883446-6883607)
chr2 (139-324)||(14904265-14904451)
chr2 (61-169)||(25415782-25415890)
chr2 (139-328)||(38422322-38422512)
chr2 (175-341)||(90080-90248)
chr2 (120-280)||(43672745-43672906)
chr2 (259-341)||(2565866-2565948)
chr2 (259-341)||(18780924-18781006)
chr2 (207-341)||(19678245-19678382)
chr2 (259-341)||(6271355-6271437)
chr2 (165-341)||(29303342-29303522)
chr2 (69-161)||(10023326-10023418)
chr2 (259-341)||(45277251-45277333)
chr2 (259-341)||(7880108-7880190)
chr2 (255-324)||(25415498-25415567)
chr2 (282-341)||(6883607-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (222-338)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (139-228)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (263-341)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 61 - 343
Target Start/End: Original strand, 25201464 - 25201744
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  25201464 ttattgatataagttatcaagtgtgctaaaattcat---agaaagtacacttttaacaacagtctaatattgattttttatcatcataatggacttgtta 25201560  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 259  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  25201561 gaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgt 25201660  T
Q  260 atcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 343  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25201661 atcaaatattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 25201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 13957478 - 13957681
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||    
T  13957478 tatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatcta 13957577  T
Q  239 aaaagtctaactctaa-tttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 337  Q
    |||| |||||| |||| ||||||||| |||||||  ||||||| |||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||     
T  13957578 aaaactctaacactaattttgtatcatgtattatcattgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtgt 13957677  T
Q  338 tgat 341  Q
    ||||    
T  13957678 tgat 13957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 64 - 333
Target Start/End: Original strand, 51758632 - 51758901
Alignment:
Q  64 ttgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaa 163  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||| |||||| |  |||||| ||||||||| ||||||| |||| ||||||||| |     
T  51758632 ttgatgtaagttattaagtgtgctaaaattcaccattgaaggtacacctttaacta--gtctaacattaattttgtatcatcgtaataaacttgttaaag 51758729  T
Q  164 atacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatc 262  Q
    ||||||||   ||||||| || ||||||||||||||| |||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||||||    
T  51758730 atacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatc 51758829  T
Q  263 aagtattattgttgttattag-tttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 333  Q
    | |||||||||||||||| || ||||||||||  || ||||  ||| ||||||||||| |||||||| ||||    
T  51758830 atgtattattgttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattac 51758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 341
Target Start/End: Original strand, 10142410 - 10142576
Alignment:
Q  176 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgt 274  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| || |||||||||| || ||||||||||||| ||||||| |||||| ||||||||||    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  275 tgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||| ||||||||| ||  |||||||||||||||| ||| ||||||| ||||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtgttgat 10142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 42511586 - 42511386
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||| ||||||||||||||||| |||||| |   ||||||| ||||||||||||||||||||| ||||||| |||||||||  |||||||||  ||||    
T  42511586 tatcattataatgaacttgttagagatacttctaacatataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttcta 42511487  T
Q  239 aaaagtctaactctaa-tttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 337  Q
    |||||  |||| |||| ||||||||| |||||||||||||||| |||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||||     
T  42511486 aaaag--taacactaattttgtatcatgtattattgttgttatgagtttaacattggagaa-tttgcatctaagagtttaaaatttagttaattacgtgc 42511390  T
Q  338 tgat 341  Q
    ||||    
T  42511389 tgat 42511386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 14192147 - 14192065
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  14192147 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 14192065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 51337817 - 51337997
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 51337916  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  51337917 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 51337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 28143333 - 28143196
Alignment:
Q  207 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttattagtttaacattgaagaattttg 303  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||  ||||| ||||| |||||||||    
T  28143333 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28143234  T
Q  304 tatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||| ||| || ||||||||||||  ||||||| ||||    
T  28143233 tatccaaatgtctaaaatttaattgattacgtgttgat 28143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 300
Target Start/End: Complemental strand, 20152231 - 20151992
Alignment:
Q  62 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 161  Q
    ||||||||||||| | |||||||||| |||||| |||| | |   | ||| ||||||||| ||||| | | || || ||| |||| ||| |||||| |||    
T  20152231 tattgatataagtgagtaagtgtgcttaaattcctcattggagacatactattaacaacattctaacactcatattatataatcaaaataaacttgatag 20152132  T
Q  162 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac-tctaatttgta 260  Q
    | |||||| |   ||||||| ||| ||||||| ||||| || | || |||||||||||||||| | | ||| ||||||||||| |||| |    ||||||    
T  20152131 agatacttgtaacatataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaacattggttttgta 20152032  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaatt 300  Q
    |||| |||| ||||||||||  |||||| |||| ||||||    
T  20152031 tcaactattgttgttgttatgggtttaatattggagaatt 20151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 61 - 341
Target Start/End: Complemental strand, 39038589 - 39038311
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||| ||||| |||||||||||| |||||||||    
T  39038589 ttattgatataaattattaagtgtgctaaaattcatcattgaaggtacacttttaacaacaatccaacattgattttgtatcatcataataaacttgtta 39038490  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 259  Q
    || ||||||||   ||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||| |||||||||||||||| |||| |||||    
T  39038489 gagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgt 39038390  T
Q  260 atcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||| |||||||||||||||| ||||||||||||  ||  |||  ||| |||||||||||||||||||| ||||||| ||||    
T  39038389 atcatgtattattgttgttatgagtttaacattg-gga--tttccatccaaaagtttaaaatttaattaattacgtgttgat 39038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 43178923 - 43178647
Alignment:
Q  62 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 161  Q
    |||||||||||||||||||||||| ||||||| | ||| ||| |||||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||| |||    
T  43178923 tattgatataagttattaagtgtgttaaaattaaccattgaaggtacacatttaacaatagtctaacattgattttgtatcatcataatgaatttggtag 43178824  T
Q  162 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 260  Q
    | ||||||||   ||||||| |||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| |||| ||||||    
T  43178823 agatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 43178724  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    | | ||||||   ||||||| |||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||| ||||    
T  43178723 t-atgtatta---ttgttatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtgttgat 43178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 24441864 - 24441706
Alignment:
Q  185 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttattag 283  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||  ||| ||||||||| |||||||||||||| | ||    
T  24441864 aggaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgag 24441765  T
Q  284 ttt-aacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||    
T  24441764 tttaaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtgttgat 24441706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 6195805 - 6195668
Alignment:
Q  207 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttattagtttaacattgaagaattttg 303  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||  ||||| ||||| |||||||||    
T  6195805 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 6195706  T
Q  304 tatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||| ||| |||||||||||||||| ||||||| ||||    
T  6195705 tatccaaatgtttaaaatttaattaattacgtgttgat 6195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Complemental strand, 6189332 - 6189152
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 6189233  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6189232 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtataaaatttaattaattacgtgttgat 6189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 19311773 - 19311691
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  19311773 tatcaagtattattgttgttatgggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 19311691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 48636868 - 48637048
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48636967  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  48636968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 48637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 8069846 - 8069928
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  8069846 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 8069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 8113778 - 8113640
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctct- 237  Q
    |||||||||||||||||||||||| |||  |||   |||||||   | ||||||||||||||||  ||||||||||  ||||| ||| |||||| ||||     
T  8113778 tatcatcataatgaacttgttagagatatctataacatataaaagtaagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctcta 8113679  T
Q  238 aaaaagtctaactctaa-tttgtatcaagtattattgtt 275  Q
    |||||||||||| |||| ||||||||| |||||||||||    
T  8113678 aaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 324
Target Start/End: Original strand, 23305442 - 23305648
Alignment:
Q  115 aacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagga 214  Q
    ||||||||||||| ||| ||||| || |||| ||||||||||| ||      ||| | | |||| || |||||||| || ||||||||||||||||| ||    
T  23305442 aacaacagtctaacattgattttgtaacatcgtaatgaacttggta------cttgtagcatattaaaagaggaataatctacttctagcatacaaatga 23305535  T
Q  215 gttcttgcatctatgatttctctaaaaagtctaactctaatttg-tatc--aagtattattgttgttattagtttaacattgaagaattttgtatctaaa 311  Q
    ||||| | ||||  |||| ||| ||||||||||||  | ||||  ||||  |||||||||||| |||||  ||||||||||| | ||||||||||| |||    
T  23305536 gttctcgtatcttagattcctcaaaaaagtctaaccttgattttctatcgcaagtattattgtagttatgggtttaacattggataattttgtatccaaa 23305635  T
Q  312 agtttaaaattta 324  Q
    ||| |||||||||    
T  23305636 agtctaaaattta 23305648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 8113625 - 8113566
Alignment:
Q  265 gtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaattta 324  Q
    |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||    
T  8113625 gtattattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaattta 8113566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 48238625 - 48238804
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48238724  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||||  ||| || ||||||||||||| ||||||| ||||    
T  48238725 tcaagtattattgttgttatgtgtt-aacattggagaattttgtattcaaatgtctaaaatttaattaattacgtgttgat 48238804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 14573995 - 14574068
Alignment:
Q  176 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 249  Q
    |||||| ||| ||||||||||||| || | || |||||||||||||| ||| ||||| |||| |||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaac 14574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 11648435 - 11648157
Alignment:
Q  62 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 161  Q
    |||| ||||||||||||||||||||| |||| || ||| |||  ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  11648435 tattaatataagttattaagtgtgcttaaatacaccattgaagttacacatttaacaatagtctaacattaattttgtatcattataatgaacttgttag 11648336  T
Q  162 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 260  Q
    | |||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| ||||||    
T  11648335 agatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgta 11648236  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||  | ||||||||||||| |||||||||||| || |||||  ||| |||||||||||||||||||| ||| ||| ||||    
T  11648235 tca--tgttattgttgttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaattaattatgtgttgat 11648157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 61 - 341
Target Start/End: Complemental strand, 961008 - 960728
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| || || ||||||||| ||||||||||||||||||||||    
T  961008 ttattgatataagttattaagtgtgctaaaattgaccattgaaggcacacttttaacaacaatccaacattaattttgtatcatcataatgaacttgtta 960909  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaag-tctaactctaattt-g 258  Q
    |  ||  ||||   ||||||| |||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||||  ||||||  |||||| |    
T  960908 gctatgtttataacatataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttg 960811  T
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
     | || ||||| ||||||| || |||||||||||  ||||||||| ||| ||||||||||| |||||||| ||||||| ||||    
T  960810 caccatgtattcttgttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtgttgat 960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 35824166 - 35824273
Alignment:
Q  187 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttattagtt 285  Q
    ||||||||||||||| | |||||||||| |||||  |||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||||||| ||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagtt 35824265  T
Q  286 taacattg 293  Q
    ||||||||    
T  35824266 taacattg 35824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 602280 - 602175
Alignment:
Q  237 taaaaagtctaactctaattt-gtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 335  Q
    ||||||||||||| ||||||| || ||| |||||||||||||||| |||||||||||  ||||||||  ||| |||||||||||||||||||| ||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  336 gatgat 341  Q
    | ||||    
T  602180 gttgat 602175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 341
Target Start/End: Complemental strand, 11994623 - 11994463
Alignment:
Q  183 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattattgttgttat 280  Q
    ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||||||||||    
T  11994623 agaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattttaacacatttttttttatcaagtattattgttgttat 11994524  T
Q  281 tagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
      ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  11994523 gggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 11994463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 9382062 - 9381946
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||||||||||||||||||||   ||| | | | ||||||| | | ||||||||||||||||  ||||||| ||||||||| |||||||||| |||||    
T  9382062 tatcatcataatgaacttgttagc--tacctgtagcatataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctcta 9381965  T
Q  239 aaaagtctaactctaattt 257  Q
    ||||||||||| |||||||    
T  9381964 aaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 32073462 - 32073545
Alignment:
Q  189 atgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattat 271  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtatcttgtattat 32073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 24683070 - 24683231
Alignment:
Q  82 tgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaa 181  Q
    |||||||||||||| ||| | | ||||||  ||||||||||||||| ||| ||||| ||| |||||||| |||||| ||       || | | |||||||    
T  24683070 tgtgctaaaattcaccattggaggtacacagttaacaacagtctaacattgattttgtattatcataataaacttggtat------ttgtagcatataaa 24683163  T
Q  182 gagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 249  Q
     ||||||||||| ||||| ||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  24683164 aagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaac 24683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 2879039 - 2878957
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2879039 tatcaagtattattgttgttatgagtttaatattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2878957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 6927388 - 6927306
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6927388 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 28509524 - 28509606
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28509524 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 28516731 - 28516813
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28516731 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 323
Target Start/End: Original strand, 1830844 - 1831104
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||| ||| ||| ||||| ||||||||||||||||||| ||    
T  1830844 ttattgatataagttattaagtgtcctaaaattaaccattgaaagtacacatttaacaatagtataacattgattttgtatcatcataatgaacttgcta 1830943  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 259  Q
    |||||||||||   ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   ||||| |||||||||||||||  |||| |||||    
T  1830944 gaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgt 1831043  T
Q  260 atcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaattt 323  Q
    |||| ||||||   ||||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  1831044 atcatgtatta---ttgttataagtttaacattggagaattttccatccaaaagtttaaaattt 1831104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 11680720 - 11680517
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||||||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||| |||  | ||||||  |   |||| |||| ||| |    
T  11680720 tatcatcataatgaacttgttagagatacttatagcatataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaa 11680621  T
Q  239 aaaagtctaactctaattt-gtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 337  Q
    |||||||||||  |||||| ||||||||||||||||||||||  |||||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||     
T  11680620 aaaagtctaacaataattttgtatcaagtattattgttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtgt 11680521  T
Q  338 tgat 341  Q
    ||||    
T  11680520 tgat 11680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 335
Target Start/End: Original strand, 14677914 - 14678076
Alignment:
Q  175 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 272  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| |||||| |  |  ||| ||||||||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  273 gttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 335  Q
    ||||||||  ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgt 14678076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 33516457 - 33516375
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  33516457 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 33516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 4065150 - 4064985
Alignment:
Q  175 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattg 273  Q
    |||||||  |||||||||||| ||| || |||| ||||||||||||| |||| || || |||||||||||  ||| ||  ||| ||||||||||| ||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt--aacgctggttttgtatcaagtataattg 4065053  T
Q  274 ttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||| |||  |||||| |||| |||||| || ||| |||||  ||||||||||||| ||| ||| ||||    
T  4065052 ttgctatgggtttaatattggagaattatgcatccaaaaggctaaaatttaattaattaagtgttgat 4064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 14679116 - 14679000
Alignment:
Q  185 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttattag 283  Q
    |||||||||| |||| || |||| ||| ||| | |||||||| |||||  |||||||| | |||| ||| ||| |||||||||||||||||| | ||  |    
T  14679116 aggaatgatgcacttgtaacatataaatgagattttgcatctctgattcttctaaaaaatttaacactagttttgtatcaagtattattgttatcatgcg 14679017  T
Q  284 tttaacattgaagaatt 300  Q
    ||||| |||||||||||    
T  14679016 tttaatattgaagaatt 14679000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 61 - 335
Target Start/End: Complemental strand, 5120856 - 5120580
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    |||||||||||| |||| |||||||||||||||||   | ||| ||||||||||||||||||| ||| ||| || || |||||| |||||||||||||||    
T  5120856 ttattgatataaattatcaagtgtgctaaaattcacatttgaaggtacacttttaacaacagtttaacattgatattctatcattataatgaacttgtta 5120757  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagg---agttcttgcatctatgatttctctaaaaagtctaactctaa-tt 256  Q
    || ||||||||   ||||||| ||||||||| ||||||||||||||||||| |   |||||||| |||||||||| || |||||| |||||| |||| ||    
T  5120756 gagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattt 5120657  T
Q  257 tgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 335  Q
    ||||||| |||||||||||||||| ||  |||||||| ||||||||  ||| |||||||||||||||||||| ||||||    
T  5120656 tgtatcatgtattattgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgt 5120580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 23318327 - 23318168
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||| ||| ||||| ||| ||||||||||||||||||    
T  23318327 ttattgatataagttattaagtgtgataaatttcaccattgaatgtacacttttaacaacaacataacattgattttgtataatcataatgaacttgtta 23318228  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 221  Q
     | |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23318227 aagatacttatagtatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 43171267 - 43171066
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    ||||||||||||||||||  |||| |||| |||   ||||||| | |||||||||||||||||||  |||||||||||||||| || ||||||| |||||    
T  43171267 tatcatcataatgaactt--tagagatacctataacatataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctcta 43171170  T
Q  239 aaaagtctaactctaa-tttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 337  Q
     |||||||||| |||| ||||||| | |||||||| ||||||  |||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||     
T  43171169 caaagtctaacactaattttgtattatgtattatttttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtgt 43171070  T
Q  338 tgat 341  Q
    ||||    
T  43171069 tgat 43171066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 328
Target Start/End: Original strand, 26402144 - 26402295
Alignment:
Q  175 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaat-ttgtatcaagtattattg 273  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||| ||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  274 ttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 328  Q
     |   || ||||||| |||| ||||||||  ||| ||||||||||||||||||||    
T  26402244 gt---atgagtttaaaattggagaattttccatccaaaagtttaaaatttaatta 26402295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 14651656 - 14651489
Alignment:
Q  175 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc-taatttgtatcaagtattattg 273  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| | |  ||| |||||||||||||||    
T  14651656 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacattttttttatcaagtattattg 14651557  T
Q  274 ttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||  |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  14651556 ttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 14651489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 7850480 - 7850660
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 7850579  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  7850580 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 7850660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 33922322 - 33922247
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattt 136  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| |||||| ||| ||| ||||    
T  33922322 ttattgacataagtgattaagtgtgctaaaattcatcattgaaggtacacttttaataacagtttaaaattgattt 33922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 38491310 - 38491392
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  38491310 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 38491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 12783929 - 12783770
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  12783929 ttattgataaaagttattaagtgtgttaaaattcatcattgaaggtacacttttaacaacagtctaacattgattttgtatcatcataatgaacttgtta 12783830  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 221  Q
    || |||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  12783829 gagatacttatagcatataaaaagaggaatgatgtacttctaggatac-aaggagttcttg 12783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 75 - 292
Target Start/End: Complemental strand, 47397437 - 47397224
Alignment:
Q  75 tattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggt 174  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||| |||||| ||| ||||| ||||||     ||||||||||||| |||||||| |     
T  47397437 tattaagtgtgctaaaatttaccattgaaggtacacttttaacaaccgtctaacattgattttgtatcat-----tgaacttgttagagatacttatagc 47397343  T
Q  175 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattg 273  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||  |||| ||||||||| ||||| |||    
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  274 ttgttattagtttaacatt 292  Q
    ||||||| |||||||||||    
T  47397242 ttgttatgagtttaacatt 47397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 12028035 - 12028183
Alignment:
Q  187 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttattagtt 285  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||| ||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctctaaaa-gtctaacactaattttgtatcatgtattattgttgttatgagtt 12028133  T
Q  286 taacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 335  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||| ||||||    
T  12028134 taacattggagaattttgcatccaaaagtttaaaatttagttaattacgt 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 324
Target Start/End: Complemental strand, 5208592 - 5208454
Alignment:
Q  187 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttattagtt 285  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||  ||||| |||||||||  ||     
T  5208592 gaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactgttgttatgggtc 5208493  T
Q  286 taacattgaagaattttgtatctaaaagtttaaaattta 324  Q
    |||||||| ||||||||| ||| ||||||||||||||||    
T  5208492 taacattgtagaattttgcatccaaaagtttaaaattta 5208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 48646236 - 48646355
Alignment:
Q  223 atctatgatttctctaaaaagtctaactctaatttg-tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaat 321  Q
    ||||||| || ||||||||| |||||| |||||||  ||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||    
T  48646236 atctatggttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaat 48646335  T
Q  322 ttaattacttacgtgatgat 341  Q
    ||||||| || |||| ||||    
T  48646336 ttaattaattgcgtgttgat 48646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 36296868 - 36297048
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 36296967  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  36296968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 36297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 42722403 - 42722583
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 42722502  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  42722503 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 42722583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 28945697 - 28945560
Alignment:
Q  207 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttattagtttaacattgaagaattttg 303  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||  ||||| ||||| |||||||||    
T  28945697 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28945598  T
Q  304 tatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  28945597 tatccaaatgtctaaaatttaattaattacgtgttgat 28945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 26221954 - 26222036
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  26221954 tatcaagtattattgtttttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 26222036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 49228473 - 49228403
Alignment:
Q  258 gtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 328  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||  |   ||||||||||||| ||||||    
T  49228473 gtatcacgtattattgttgttatgagtttaacattggagaatttttcaatcaaaagtttaaaatgtaatta 49228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 35501460 - 35501355
Alignment:
Q  223 atctatgatttctctaaaaagtctaactctaatttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatt 322  Q
    |||| ||||||||| |||||||||||| |   ||| |||||||||||||  |||||||  ||||||||||| |||||  |||||  |||||  |||||||    
T  35501460 atctttgatttctcgaaaaagtctaacacatttttttatcaagtattataattgttatgggtttaacattggagaatgatgtatacaaaagcctaaaatt 35501361  T
Q  323 taatta 328  Q
    ||||||    
T  35501360 taatta 35501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 12783675 - 12783628
Alignment:
Q  210 aaggagttcttgcatctatgatttctctaaaaagtctaactctaattt 257  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattt 12783628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 139 - 333
Target Start/End: Original strand, 47185206 - 47185401
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||||| ||||||||||||||| |||||||| | ||||||| |||| |||||||||||| ||   |||||| ||||||||| |||||||||| |||||    
T  47185206 tatcatcacaatgaacttgttagagatacttatagcatataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctcta 47185305  T
Q  239 aaaagtctaactctaa-tttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 333  Q
    ||||||||||| |||| ||||||||| | |||||||||||||| |||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||    
T  47185306 aaaagtctaacactaattttgtatcatgaattattgttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattac 47185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 6024587 - 6024505
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  6024587 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 6024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 341
Target Start/End: Complemental strand, 23044825 - 23044645
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 23044726  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  23044725 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 23044645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 31884842 - 31884705
Alignment:
Q  207 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttattagtttaacattgaagaattttg 303  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||  ||||| ||||| |||||||||    
T  31884842 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 31884743  T
Q  304 tatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  31884742 tatccaaatgtctaaaatttaattaattacgtgttgat 31884705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 44879476 - 44879529
Alignment:
Q  205 atacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg 258  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 25621679 - 25621882
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||| |||||||| |||||||| |||  |||   ||| ||| |||||||||||||||||| || ||||||| ||||| ||| || ||||||| |||||    
T  25621679 tatcattataatgaagttgttagagatatgtatatcatagaaaaagaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctcta 25621778  T
Q  239 aaaagtctaactctaattt-gtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 337  Q
    ||| ||||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||||||||  || ||||||||||||||||| || |||||||     
T  25621779 aaaggtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtgt 25621878  T
Q  338 tgat 341  Q
    ||||    
T  25621879 tgat 25621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 6883446 - 6883607
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    |||||||||||| |||||||||||||||||     ||| |||   ||| ||||||||||| ||| || ||| ||||| ||||||||||||||||||||||    
T  6883446 ttattgatataaattattaagtgtgctaaa-----tcaaaga---tacgcttttaacaacggtcgaacattgattttatatcatcataatgaacttgtta 6883537  T
Q  161 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatga 230  Q
    || |||||| | | ||||||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  6883538 gagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 139 - 324
Target Start/End: Original strand, 14904265 - 14904451
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||||||||||||||||||||| ||||||||   ||||||| |||||| |||| ||||| ||| ||| ||| ||||| |||  |||||||||  ||||    
T  14904265 tatcatcataatgaacttgttagagatacttataacatataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttcta 14904364  T
Q  239 aaaagtctaactctaa-tttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaattta 324  Q
    |||| ||||||  ||| ||||||||| |||||||||||||||  || ||||||||| | ||||||| ||  ||||||||||||||||    
T  14904365 aaaaatctaacaataattttgtatcatgtattattgttgttaggaggttaacattggataattttgcattcaaaagtttaaaattta 14904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 25415890 - 25415782
Alignment:
Q  61 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 160  Q
    |||||||||||| || |||||||| |||||||||||| | ||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  25415890 ttattgatataaatttttaagtgtactaaaattcatctttgaaggtacacttttaacaacaatctaacattgattttgtatcatcataatgaacttgtta 25415791  T
Q  161 gaaatactt 169  Q
    || ||||||    
T  25415790 gagatactt 25415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 328
Target Start/End: Complemental strand, 38422512 - 38422322
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 238  Q
    |||||||| |||||||||| |||| |||||| | | ||||||| ||||||||||||||||| || |||| ||||||||||| | |||| |||||  ||||    
T  38422512 tatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttcta 38422413  T
Q  239 aaaagtctaactct-aatttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 328  Q
    ||||||||||| ||   ||||||||||||| |||| |||||||  |||| | |||| |||| | || ||| |||||  |||||||||||||    
T  38422412 aaaagtctaacactggttttgtatcaagtaatattattgttatgggtttgatattggagaagtctgcatccaaaaggctaaaatttaatta 38422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 90248 - 90080
Alignment:
Q  175 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 272  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||    
T  90248 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacatttttttttatcaagtattatt 90149  T
Q  273 gttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||  |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  90148 gttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 90080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 120 - 280
Target Start/End: Complemental strand, 43672906 - 43672745
Alignment:
Q  120 cagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttct 219  Q
    |||||||| ||| || || |||||||| |||||| ||| |||||||||||   | ||||||| ||||||||||||||||| || |||| |||||||||      
T  43672906 cagtctaacattgatattgtatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttac 43672807  T
Q  220 tgcatctatgatttctctaaaaagtctaactct-aatttgtatcaagtattattgttgttat 280  Q
     | |||| ||||| |||||||||||||||  || | ||||||||||||||||||| ||||||    
T  43672806 ggtatctttgattcctctaaaaagtctaatactgattttgtatcaagtattattgatgttat 43672745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 2565866 - 2565948
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2565866 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2565948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 18781006 - 18780924
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  18781006 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 18780924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 19678245 - 19678382
Alignment:
Q  207 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttattagtttaacattgaagaattttg 303  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||  ||||| ||||| |||||||||    
T  19678245 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 19678344  T
Q  304 tatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  19678345 tatccaaatgtctaaaatttaattaattacgtgttgat 19678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 6271437 - 6271355
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6271437 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 165 - 341
Target Start/End: Original strand, 29303342 - 29303522
Alignment:
Q  165 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 260  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 29303441  T
Q  261 tcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    ||||||||||||||||||||  |||||  |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  29303442 tcaagtattattgttgttatgtgtttagaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 29303522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 10023326 - 10023418
Alignment:
Q  69 ataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 161  Q
    ||||||||| ||||||||||||||||  ||| ||| |  ||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||    
T  10023326 ataagttatgaagtgtgctaaaattctccattgaatgcgcacttttaacatcaatctaacattgattttgtatcatcataatgaacttgttag 10023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 45277333 - 45277251
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  45277333 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 45277251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 7880190 - 7880108
Alignment:
Q  259 tatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||||||||||| |  ||||| ||||| ||||||||||||| ||| || |||||||||| || ||||||| ||||    
T  7880190 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaactaattacgtgttgat 7880108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 25415567 - 25415498
Alignment:
Q  255 tttgtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaattta 324  Q
    ||||||||| |||||||||||||||| || ||||||||  ||||||||  ||| |||| |||||||||||    
T  25415567 tttgtatcatgtattattgttgttatgagcttaacattagagaattttccatcaaaaactttaaaattta 25415498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 6883607 - 6883666
Alignment:
Q  282 agtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
    |||||||||||| |||||||| |||| |||| ||||||||||||||| ||| ||| ||||    
T  6883607 agtttaacattggagaattttctatccaaaaatttaaaatttaattaattatgtgttgat 6883666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 903 - 1020
Alignment:
Q  222 catctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaa 320  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||  |||||||| ||| || ||||||| |    
T  903 catctatgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaata 1002  T
Q  321 tttaattacttacgtgat 338  Q
    |||| ||| |||| ||||    
T  1003 tttagttaattacatgat 1020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 1104 - 1015
Alignment:
Q  139 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctat 228  Q
    |||||||||||||||||||||||| ||| |||| | ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  1104 tatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtatctat 1015  T

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Target: scaffold0743 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 2635 - 2557
Alignment:
Q  263 aagtattattgttgttattagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 341  Q
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T  2635 aagtattattgttgttatgtgtttaacattggataattttgtatccaaatgtctaaaatttaattaattatgtgttgat 2557  T

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